View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17984_high_13 (Length: 238)

Name: NF17984_high_13
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17984_high_13
NF17984_high_13
[»] chr7 (3 HSPs)
chr7 (18-202)||(34823550-34823735)
chr7 (27-103)||(45618510-45618585)
chr7 (30-103)||(28514617-28514689)
[»] chr8 (1 HSPs)
chr8 (27-116)||(13018454-13018542)
[»] chr2 (3 HSPs)
chr2 (24-121)||(38402498-38402594)
chr2 (44-106)||(36903938-36904000)
chr2 (56-117)||(9131650-9131711)
[»] chr1 (1 HSPs)
chr1 (49-106)||(894755-894812)
[»] chr6 (1 HSPs)
chr6 (44-103)||(6100743-6100802)
[»] scaffold0004 (1 HSPs)
scaffold0004 (49-107)||(97866-97924)
[»] chr3 (2 HSPs)
chr3 (44-106)||(48993339-48993401)
chr3 (27-103)||(45249423-45249498)
[»] chr4 (1 HSPs)
chr4 (30-103)||(52270443-52270515)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 34823550 - 34823735
Alignment:
Q  18 atctaaaagaaatgtttaacttatattttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagcatgacacttaat 117  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34823550 atctaaaagaaatgtttaacttatattttc-aagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagcatgacacttaat 34823648  T
Q  118 taaatagagagacnnnnnnnnnnnnnnngaaggaattaaat--agagaattaaaaggtcaattacagagtttaaataggcaggatgc 202  Q
    ||||||||||||                |||||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||||    
T  34823649 taaatagagagaatttttttttttttttgaaggaattaaatagagagaattaaaaggtcaattagagagtttaaataggccggatgc 34823735  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 45618510 - 45618585
Alignment:
Q  27 aaatgtttaacttatattttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgtta 103  Q
    |||| ||| |||||||||||  |||||||||||| |||||||||||||||||| |||| |||||  |||||||||||    
T  45618510 aaatatttgacttatattttc-aagacataatttccttttatgggttccttaaacaatacccttagggcacttgtta 45618585  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 28514689 - 28514617
Alignment:
Q  30 tgtttaacttatattttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgtta 103  Q
    ||||| |||||||||||  ||| ||||||||  ||||||||||||||||| |||| |||||  |||||||||||    
T  28514689 tgtttgacttatattttc-aaggcataatttctttttatgggttccttaaacaatgcccttagggcacttgtta 28514617  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 13018542 - 13018454
Alignment:
Q  27 aaatgtttaacttatattttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagcatgacacttaa 116  Q
    |||||||| |||||||||||  |||| ||| |||||||||||||||||||||| |||| |||||  | ||||||||| || ||| |||||    
T  13018542 aaatgtttgacttatattttc-aagatatatttttcttttatgggttccttaaacaatgcccttaggacacttgttaacaagacccttaa 13018454  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 38402594 - 38402498
Alignment:
Q  24 aagaaatgtttaacttatattttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagcatgacacttaattaaa 121  Q
    ||||| |||||||||| ||||||  || |||||||||  |||||||| |||||||| |||| ||||| || |||||||||||| ||| || |||||||    
T  38402594 aagaagtgtttaacttgtattttcaaa-acataatttctttttatggattccttaaacaatgcccttatgacacttgttagcaagaccctaaattaaa 38402498  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 36904000 - 36903938
Alignment:
Q  44 tttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagca 106  Q
    |||| ||||||||||||  |||| |||||||||||| |||| |||||  ||||||||||||||    
T  36904000 ttttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttagca 36903938  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 9131711 - 9131650
Alignment:
Q  56 aattttcttttatgggttccttaagcaatccccttttggcacttgttagcatgacacttaat 117  Q
    |||||||||||| ||||||||||| |||| |||||  || ||||||| ||||||| ||||||    
T  9131711 aattttcttttacgggttccttaaacaatgcccttagggaacttgtttgcatgacccttaat 9131650  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 894812 - 894755
Alignment:
Q  49 aagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagca 106  Q
    |||||||||||| ||||| |||||||||||| |||| |||||  ||||||||||||||    
T  894812 aagacataatttccttttgtgggttccttaaacaatgcccttagggcacttgttagca 894755  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 6100743 - 6100802
Alignment:
Q  44 tttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgtta 103  Q
    |||| |||||||||||| ||||| |||||||||||| |||| |||||  |||||||||||    
T  6100743 ttttcaagacataatttccttttgtgggttccttaaacaatgcccttagggcacttgtta 6100802  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 97866 - 97924
Alignment:
Q  49 aagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagcat 107  Q
    |||||| ||||| |||||||||||| ||||| |||| |||||  |||||||||||||||    
T  97866 aagacaaaatttgcttttatgggttgcttaaacaatgcccttagggcacttgttagcat 97924  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 48993401 - 48993339
Alignment:
Q  44 tttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgttagca 106  Q
    |||| |||||||||||| || || |||||||||||| |||| |||||  ||||||||||||||    
T  48993401 ttttcaagacataatttcctcttgtgggttccttaaacaatgcccttagggcacttgttagca 48993339  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 45249423 - 45249498
Alignment:
Q  27 aaatgtttaacttatattttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgtta 103  Q
    |||||||| |||| ||||||  ||||||||||||  |||| |||||||||||| |||| |||||  |||||||||||    
T  45249423 aaatgtttgacttgtattttc-aagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgtta 45249498  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 52270515 - 52270443
Alignment:
Q  30 tgtttaacttatattttttaagacataattttcttttatgggttccttaagcaatccccttttggcacttgtta 103  Q
    ||||| |||||||||||  |||||||| ||| ||||| |||||||||||| |||| |||||  |||||||||||    
T  52270515 tgtttgacttatattttc-aagacatattttccttttgtgggttccttaaacaatgcccttagggcacttgtta 52270443  T

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