View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_high_4 (Length: 399)
Name: NF17984_high_4
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 45001006 - 45001389
Alignment:
| Q |
16 |
actatttaccccatggtgtttaaaagaaaagtactatttactcagcagatgactacctaaacattttactttagtactaaccttgttactgttacatata |
115 |
Q |
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| T |
45001006 |
actatttaccccatggtgtttaaaagaaaagtactatttactcagcagatgactacctaaacattttactttagtactaaccttgttactgttacatata |
45001105 |
T |
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| Q |
116 |
gtgcattggaatagatattagatcaagacatagtgttacatgatttacttggtcaaagtagaatgagataaacggagcatactaagttgctttagaagtc |
215 |
Q |
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| T |
45001106 |
gtgcattggaatggatattagatcaagacatagtgttacatgatttacttggtcaaagtagaatgagataaacggagcatactaagttgctttagaagtc |
45001205 |
T |
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| Q |
216 |
tttttcaaagagctagtgtactgtcactaggccccattaattgcccnnnnnnnnnnnngatcttggatatttgcactctgatgactaaagtatgtcaaga |
315 |
Q |
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| T |
45001206 |
tttttcaaagagctagtgtactgtcactaggccccattaattgcccttttttctttttgatcttggatatttgcactttgatgactaaggtatgtcaaga |
45001305 |
T |
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| Q |
316 |
cagacaaaactataattcctttaattatggaaccaaattactgaatccagaaacaatgcctcttaggaaattataggttatttc |
399 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
45001306 |
cagacagaactataattcctttaattatggaaccaaattactgaatccagaaacaatgtctcttaggaaactatagattatttc |
45001389 |
T |
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