View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_high_6 (Length: 377)
Name: NF17984_high_6
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 28288386 - 28288035
Alignment:
| Q |
11 |
atgaaatactagttttttcttgaggatcataggtgttttgatatttccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagt |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28288386 |
atgaaatactagttttttcttgaggatcataggtgttttgatatttccaagatacattcaaatttttggttgtagaattatagttaatccatacctcagt |
28288287 |
T |
|
| Q |
111 |
agtttctccactatgtaaacttgcattccaaggtgttgacaccgatgaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccaggga |
210 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288286 |
agtttctccactatgtaaacttgcgttccaaggtgttgacaccgatgaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccaggga |
28288187 |
T |
|
| Q |
211 |
cgatttgcgtaagaatcaaactccacatgaagaaggttactagttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288186 |
cgatttgcgtaagaatcaaactccacatgaagaaggttactggttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtg |
28288087 |
T |
|
| Q |
311 |
ggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggccatatct |
362 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28288086 |
ggatttcaaatccaaaaggaaccaagaaaaatgcaattccatggccatatct |
28288035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 28305364 - 28305715
Alignment:
| Q |
11 |
atgaaatactagttttttcttgaggatcataggtgttttgatatttccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagt |
110 |
Q |
| |
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|||||| | ||||||||||||||||| | |||| ||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
28305364 |
atgaaagattagttttttcttgaggactagaggtcgtttgatattcccaagatacagtcaaattcttggttgtagaattgtacctaatccatacctcagc |
28305463 |
T |
|
| Q |
111 |
agtttctccactatgtaaacttgcattccaaggtgttgacaccgatgaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccaggga |
210 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||| |||||||| | | | |
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| T |
28305464 |
agtgtctccactatgtaaacttgcattccaaggtgttgatattgatgatttgattgaattattgttgattcccacatgctctgttgtctcgctaaattca |
28305563 |
T |
|
| Q |
211 |
cgatttgcgtaagaatcaaactccacatgaagaa---ggttactagttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattag |
307 |
Q |
| |
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| ||||||| ||||||||||||||||||||| || ||||||||| |||| |||||| |||||||| ||||| || | ||| |||||| || || | |
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| T |
28305564 |
ctatttgcgaaagaatcaaactccacatgaacaatatggttactagatgaaagcattgttgtggtgttgaatagtcccatcaagccaccagaggagtttg |
28305663 |
T |
|
| Q |
308 |
gtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggccata |
359 |
Q |
| |
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||||||||||||||||| ||| | | ||||||||||||| ||||||||||| |
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|
| T |
28305664 |
gtgggatttcaaatccataagcagctaagaaaaaggcaaggccatggccata |
28305715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 28278532 - 28278177
Alignment:
| Q |
11 |
atgaaatactagttttttcttgaggatcataggtgttttgatatttccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagt |
110 |
Q |
| |
|
|||||| | ||||||||||||||||| | ||| ||||||||| |||||||||| ||||||| |||||| ||||||||||| ||||||||||||||| |
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|
| T |
28278532 |
atgaaagattagttttttcttgaggactaggggtagtttgatattcccaagatacagtcaaattcttggttttagaattgtagctaatccatacctcagc |
28278433 |
T |
|
| Q |
111 |
agtttctccactatgtaaacttgcattccaaggtgttgacaccgatgaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccaggga |
210 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||| |||||||| | | | |
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| T |
28278432 |
attgtctccactatgtaaacttgcattccaaggtgttgatattgatgatttgattgaattattgttgattcccacatgctctgttgtctcgctaaattca |
28278333 |
T |
|
| Q |
211 |
cgatttgcgtaagaatcaaactccacatgaagaa---ggttacta---gttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaat |
304 |
Q |
| |
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| ||||||| ||||||||||||| ||||||| || |||||||| | |||| |||||| |||||||||||||| || | ||| |||||||||||| |
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| T |
28278332 |
ctatttgcgaaagaatcaaactcaacatgaacaattcggttactagatgatgaaaccattgttgtggtgttaaataggcccatcaagccaccagcagaat |
28278233 |
T |
|
| Q |
305 |
taggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggccatat |
360 |
Q |
| |
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| ||||| ||||||| ||| | ||||| | |||||| ||||||||||| |||||| |
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| T |
28278232 |
tgggtggaatttcaattcccaccggaacaaggaaaaacgcaattccatgaccatat |
28278177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 28295163 - 28295514
Alignment:
| Q |
12 |
tgaaatactagttttttcttgaggatcataggtgttttgatatttccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagta |
111 |
Q |
| |
|
||||| |||||| ||||||||||||| |||| |||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| | |
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|
| T |
28295163 |
tgaaagactagtattttcttgaggatttgaggtagtttggtatttccaagatacggtcaaattcttggttgtagaattgtacctaatccatacctcagca |
28295262 |
T |
|
| Q |
112 |
gtttctccactatgtaaacttgcattccaaggtgttgacaccgatgaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggac |
211 |
Q |
| |
|
|| |||||||||||| || |||||||||||||| | | ||||||||||||||||| |||||||||||||||| | ||| ||| | | || |
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| T |
28295263 |
gtgtctccactatgtttgctggcattccaaggtgtcgtagctgatgaaatgattgaattaatgttgattcccacatgacctcttgcctcgcgaaattcac |
28295362 |
T |
|
| Q |
212 |
gatttgcgtaagaatcaaactccacatgaagaa---ggttactagttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattagg |
308 |
Q |
| |
|
|||||||| |||||||||| || ||||||| || ||||||||| |||| |||||| ||||||||||||||||| | |||| ||||| ||||||| | |
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| T |
28295363 |
gatttgcgaaagaatcaaattctacatgaacaatttggttactagatgaaaccattgttgtggtgttaaatagacccataaagccaccatcagaattgag |
28295462 |
T |
|
| Q |
309 |
tgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggccatat |
360 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
28295463 |
ggggatttcaaatccataaggaaccaagaaaaaggcaagaccatggccatat |
28295514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 47 - 358
Target Start/End: Original strand, 28265382 - 28265696
Alignment:
| Q |
47 |
tttgatatttccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagtagtttctccactatgtaaacttgcattccaaggtgt |
146 |
Q |
| |
|
|||| |||||||||||||| | ||||| ||||||||||||||| | ||||||||||||||| | | |||||||| |||| ||| |||||||||||||| |
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|
| T |
28265382 |
tttggtatttccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccactgtgtagactagcattccaaggtgt |
28265481 |
T |
|
| Q |
147 |
tgacaccgatgaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgtaagaatcaaactccacatgaagaa-- |
244 |
Q |
| |
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|||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||| ||| || |
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|
| T |
28265482 |
aaacacagatgacatgattgaattaacgttgattcccacatgctcggttgtctcaccccattcaccattgggaaaagaatcaaactccacaagaacaatt |
28265581 |
T |
|
| Q |
245 |
-ggttactagttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaagg |
343 |
Q |
| |
|
||||||||| |||| ||| || || |||||||||| || | ||| ||| ||| ||||| ||||| || ||||||||||||||| |||| ||||| | |
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|
| T |
28265582 |
tggttactagatgaaaccatggttgtcatgttaaataggcccataaaagcagtagctgaatttggtggaatatcaaatccaaaaggagccaaaaaaaatg |
28265681 |
T |
|
| Q |
344 |
caattccatggccat |
358 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
28265682 |
caagtccatgaccat |
28265696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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