View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_1 (Length: 556)
Name: NF17984_low_1
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_1 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 15 - 540
Target Start/End: Complemental strand, 42946028 - 42945503
Alignment:
| Q |
15 |
atgatagcacaagcaccccaaacaccacgaccacaaacactgccaccacattttcaccctactattcctcaaacttctctgactcagatgcctatgcaaa |
114 |
Q |
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| T |
42946028 |
atgatagcacaagcaccccaaacaccacaaccacaaacactgccaccacattttcaccctactattcctcaaacttttctgactcagatgcctatgcaaa |
42945929 |
T |
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| Q |
115 |
ggaccaaaggagagtaggtggtttaggaagagccggaggagaaggcgtggcggtggagaaagattctgaagatccttatcttgatttcaggcattccatg |
214 |
Q |
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| T |
42945928 |
ggaccaaaggagagtaggtggtttaggaagagccggaggagaaggcgtggcggtggagaaagattctgaagatccttatcttgatttcaggcattccatg |
42945829 |
T |
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| Q |
215 |
cttcaaatgatattggagaatgaaatatactctaaagatgaccttagagagcttttgaactgttttcttcagctgaatgcaccttaccatcatggtgtta |
314 |
Q |
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| T |
42945828 |
cttcaaatgatattggagaatgaaatatactctaaagatgaccttagagagcttttgaactgttttcttcagctgaatgcaccttaccatcatggtgtta |
42945729 |
T |
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| Q |
315 |
ttgttagagcttttactgagatttggaatggagtttccattatgaggcctagttcacccagtttgcacacatctcgtacacgtacccgtacccgtaagcc |
414 |
Q |
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| T |
42945728 |
ttgttagagcttttactgagatttggaatggagtttccattatgaggcctagttcacccagtttgcatacatctcgtacacatacccgtacccgtaagcc |
42945629 |
T |
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| Q |
415 |
acgtcaacattaactataaagtttgtgtttggtattagggtgggtttgacaaattcctgatagcaccgtgattttgtagaagctgcaaaaatgtagcttt |
514 |
Q |
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| T |
42945628 |
acgtcaacattaactataaagtttgtgtttggtattagggtgggtttgacaaattcctgatagcaccgtgattttgtagaagctacaaaaatgtagcttt |
42945529 |
T |
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| Q |
515 |
tgtaaaatcatggcggctgccaaacc |
540 |
Q |
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| T |
42945528 |
tgtaaaatcatggcggctgccaaacc |
42945503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0907 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 167 - 350
Target Start/End: Complemental strand, 3039 - 2856
Alignment:
| Q |
167 |
gtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatgaaatatactctaaagatgaccttagagagc |
266 |
Q |
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| T |
3039 |
gtggagaaagattctgatgacccttatcttgattttcgacattcaatgttgcagatgatattggagaatgagatatattctaaagatgatcttagagagc |
2940 |
T |
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| Q |
267 |
ttttgaactgttttcttcagctgaatgcaccttaccatcatggtgttattgttagagcttttactgagatttggaatggagttt |
350 |
Q |
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| T |
2939 |
ttttgaactgttttcttcagctgaattcgaaggaacatcatgggattattataagagcttttactgagatttggaatggagttt |
2856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 18829605 - 18829681
Alignment:
| Q |
161 |
gtggcggtggagaaagattctgaagatccttatcttgatttcaggcattccatgcttcaaatgatattggagaatga |
237 |
Q |
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| T |
18829605 |
gtggcggtagagaaggattctgaggatccgtatcatgatttcaaacattctatgcttcaaatgatcttcgagaatga |
18829681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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