View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_10 (Length: 336)
Name: NF17984_low_10
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 36264081 - 36263759
Alignment:
| Q |
14 |
catcaactccagtcaatcttacctcaccttcaaatcaagccctcctcattacaacactccagccaccatagcttatctcttgaactcatcagtccctcta |
113 |
Q |
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| T |
36264081 |
catcaactcctgtcaatcttacctcaccttcaaatcaagccctcctcattacaacactccagccaccatagcttatctcttgaactcaacagtccctcta |
36263982 |
T |
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| Q |
114 |
atagccaatgccaacaacatctcatatgttgatcctattccgacggacaccatgattactgtaccagttaactgttattgctccggtcactactaccagc |
213 |
Q |
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| T |
36263981 |
attgccaatgccaacaacatctcatatgttgatcctattccgacggacaccatgattactgtaccagttaactgttattgctccggtcactactaccagc |
36263882 |
T |
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| Q |
214 |
ataattcctcatacacattgaagactgaggatgaaaactacttcactcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctca |
313 |
Q |
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| T |
36263881 |
ataattcctcatacacattgaagactgaggatgaaaactacttcactcttgccaataacacctatgagtcactcacaacatgtcaggctcttgatgctca |
36263782 |
T |
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| Q |
314 |
gaatatatatggactcacaaacc |
336 |
Q |
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| T |
36263781 |
gaatatatatggactcacaaacc |
36263759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 281
Target Start/End: Complemental strand, 36256304 - 36256049
Alignment:
| Q |
33 |
tacctcaccttcaaatcaagccctcctcattacaacactccagccaccatagcttatct-----cttgaactcatcagtccctctaatagccaatgccaa |
127 |
Q |
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| T |
36256304 |
tacctcacattcaaatcaaaccctcctcaatacaacactccaaccaccacagcttatcttatctctcgaactccacagtccctctcatagccaatgccaa |
36256205 |
T |
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| Q |
128 |
caacatctcatatgttgatcctattccgacggacaccatgattactgtaccagttaactgttattgctccggtcactactaccagcataattcctcatac |
227 |
Q |
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| T |
36256204 |
cattatctcagatggagaccctattccgactgacaccgtgatcactgtcccagtaaactatgtttgttcaggtcaccacttctagcacaattcctgatac |
36256105 |
T |
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| Q |
228 |
acattgaagactgaggatgaaaac--tacttcactcttgccaataacacctatgag |
281 |
Q |
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| T |
36256104 |
atcttgaaaactgaggatgaaaactatacttcactcttgccaataacacctatgag |
36256049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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