View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_11 (Length: 298)
Name: NF17984_low_11
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 7450871 - 7450581
Alignment:
| Q |
1 |
gtactagtagctagttggaaaaataatgtgaagaaaaagccatcaagaaaagagacgagctttccattggaagacaaagcctaagctagtccctttcatc |
100 |
Q |
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| T |
7450871 |
gtactagtagctagttggaaaaataatgtgaagaaaaagccatcaagaaaagagacgagctttccattggaagacaaagcctaagctagtccctttcatc |
7450772 |
T |
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| Q |
101 |
aaaaggttgaattaattattgcccatataaaagcaacaaatctccacagctaagtcagtatcttcgagaggcttgtatagaataatcaaagattcttgct |
200 |
Q |
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| T |
7450771 |
aaaaggttgaattaattattccccatataaaagcaacaaatctccacagctaagtcagtatcttcgagaggcttgtatagaataatcaaagattcttgct |
7450672 |
T |
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| Q |
201 |
acttga------------tttagtcccttaataaattgacactggtaagtgataataattcattccgtaattaaactaccactggcttaag |
279 |
Q |
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| T |
7450671 |
acttgatttaattaattttttagtcccttaataaattgacactggtaagtgataataattcattccgtaattaaactaccactggcttaag |
7450581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 7436794 - 7436755
Alignment:
| Q |
65 |
cattggaagacaaagcctaagctagtccctttcatcaaaa |
104 |
Q |
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| T |
7436794 |
cattggaagacaaagccaaagctagtccctttcataaaaa |
7436755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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