View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17984_low_15 (Length: 257)
Name: NF17984_low_15
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_15 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 8285126 - 8285382
Alignment:
| Q |
1 |
tgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacctgatgctgttccattccccattattgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285126 |
tgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacctgatgctgttccattccccattattgat |
8285225 |
T |
|
| Q |
101 |
catcgacatcaaggtaatcatcatcaagcgttacaaaactaatgattgaactcgagttgttattagttctaattaaagatgaattgtttaaaacaaattg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285226 |
catcgacatcaaggtaatcaatatcaagttttacaaaactaatgattgaactcgagtcattaatagttctaattaaagatgaattgtttaaaacaaattg |
8285325 |
T |
|
| Q |
201 |
agtttaaattttagttggaacattttttctattagacttgccttttgattaagccaa |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285326 |
agtttaaattttagttggaacattttttctattagacttgccttttgattaagccaa |
8285382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University