View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_16 (Length: 242)
Name: NF17984_low_16
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_16 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 5605386 - 5605613
Alignment:
| Q |
15 |
agaaagtactttatctaaggtgatgaaagggtcctgttcacgattctgttgacttgaaagccaaatattatcgcaaaagttttcaggaagatccacaaga |
114 |
Q |
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||||||||||||||||||||| ||||||| ||| ||||||| ||| || |||||||||||||||||| || |||||||||| |||||||||| |||||| |
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| T |
5605386 |
agaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaaaagtttacaggaagatcaacaaga |
5605485 |
T |
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| Q |
115 |
caatcattaagagcaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcagtcccatcccactctgtaataaacaaacccaaat |
214 |
Q |
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|||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||| |
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| T |
5605486 |
caatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatcccactctgtaaaatacaaactcaaat |
5605585 |
T |
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| Q |
215 |
caaccgaagaaaatgggagtgagaactc |
242 |
Q |
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|||| ||||||||||||| ||||||||| |
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| T |
5605586 |
caacggaagaaaatgggattgagaactc |
5605613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 5629984 - 5629757
Alignment:
| Q |
15 |
agaaagtactttatctaaggtgatgaaagggtcctgttcacgattctgttgacttgaaagccaaatattatcgcaaaagttttcaggaagatccacaaga |
114 |
Q |
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||||||||||||||||||||| ||||||| ||| ||||||| ||| || |||||||||||||||||| || |||||||||| |||||||||| |||||| |
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| T |
5629984 |
agaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaaaagtttacaggaagatcaacaaga |
5629885 |
T |
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| Q |
115 |
caatcattaagagcaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcagtcccatcccactctgtaataaacaaacccaaat |
214 |
Q |
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| T |
5629884 |
caatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatcccactctgtaaaatacaaactcaaat |
5629785 |
T |
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| Q |
215 |
caaccgaagaaaatgggagtgagaactc |
242 |
Q |
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| T |
5629784 |
caacggaagaaaatgggattgagaactc |
5629757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 5647531 - 5647353
Alignment:
| Q |
15 |
agaaagtactttatctaaggtgatgaaagggtcctgttcacgattctgttgacttgaaagccaaatattatcgcaaaagttttcaggaagatccacaaga |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||| ||| |
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| T |
5647531 |
agaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttgactaccaagccaaatattatcacaaaagttttcaggaaggtccacgaga |
5647432 |
T |
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| Q |
115 |
caatcattaagagcaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcagtcccatcccact |
193 |
Q |
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| T |
5647431 |
caatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatggaagttcattcccattccact |
5647353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 5553436 - 5553262
Alignment:
| Q |
24 |
tttatctaaggtgatgaaagggtcctgttcacgattctgttgacttgaaagccaaatattatcgcaaaagttttcaggaagatccacaagacaatcatta |
123 |
Q |
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|||||||||||||||||||||||| | ||||||||||| || ||| ||| ||| | ||||||||||||||||||||||||||||||||||||| || |
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| T |
5553436 |
tttatctaaggtgatgaaagggtcattttcacgattcttttcactcacaagataaaaagaatcgcaaaagttttcaggaagatccacaagacaatcacta |
5553337 |
T |
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| Q |
124 |
agagcaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcagtcccatcccactctgta |
198 |
Q |
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| T |
5553336 |
atagaaaagccaaagtttttaagattttgtgcatgcaatatagatgatggaagttcattcccataccactctgta |
5553262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 6308379 - 6308560
Alignment:
| Q |
15 |
agaaagtactttatctaaggtgatgaaagggtcctgttcacgattctgttgacttgaaagccaaatattatcgcaaaagttttcaggaagatccacaaga |
114 |
Q |
| |
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||||| || ||||||||||||||| |||||||| | ||||||||||||| |||| |||||| |||||| |||| ||||||||| ||||||||||||||| |
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| T |
6308379 |
agaaaataatttatctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaaga |
6308478 |
T |
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| Q |
115 |
caatcattaagagcaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcagtcccatcccactctg |
196 |
Q |
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|||||| | | | |||| |||| | |||||| |||||| |||||||||| || |||||||||||| ||| ||||||||||| |
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| T |
6308479 |
caatcactgattggaaagacaaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctg |
6308560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 13167186 - 13166991
Alignment:
| Q |
18 |
aagtactttatctaaggtgatgaaagggtcctgttcacgattctgttgacttgaaagccaaatattatcgcaaaagttttcaggaagatccacaagacaa |
117 |
Q |
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||||||||||| ||| || ||||||||||| ||||||| | || ||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
13167186 |
aagtactttatgtaaagttatgaaagggtcgtgttcacaactccgttgactcataagccaaatttcgtcggaaaagttttcaggaagatccacaagacaa |
13167087 |
T |
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| Q |
118 |
tcattaagagcaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcagtcccatcccactctgtaataaacaaacccaaa |
213 |
Q |
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| T |
13167086 |
tcactgataggaaagactaaccttgtaagattttttttatgcaatattgatgatggaagttcattcccatcccattctgtcaaaaacaaaaccaaa |
13166991 |
T |
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