View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17984_low_17 (Length: 238)
Name: NF17984_low_17
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 41572399 - 41572524
Alignment:
| Q |
90 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
189 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41572399 |
taataaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacagcataccccagcctcaaacttgtttactgctaaaaccgct |
41572498 |
T |
|
| Q |
190 |
gaacacctcctcattaccgtaagagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41572499 |
gaacacctcctcattaccgtaagagg |
41572524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 27754102 - 27753978
Alignment:
| Q |
90 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27754102 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacgggtcaccgcaatataaacagcataccccagcctcaaacttg-ttactgctaaaaccgct |
27754004 |
T |
|
| Q |
190 |
gaacacctcctcattaccgtaagagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27754003 |
gaacacctcctcattaccgtaagagg |
27753978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 21941917 - 21941998
Alignment:
| Q |
91 |
aatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatat-acacaggataccccagcctcaaacttgt |
172 |
Q |
| |
|
|||||||||||||||| | | ||||||||| |||||||| ||||||||||| | |||| | ||||||||||||||| ||||| |
|
|
| T |
21941917 |
aatgaggctgccatataccatcctgcacaaa-ccagcacatgtcaccgcaatttaacacggcataccccagcctcaatcttgt |
21941998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University