View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_2 (Length: 518)
Name: NF17984_low_2
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 12 - 508
Target Start/End: Original strand, 25894484 - 25894980
Alignment:
| Q |
12 |
catcatcctttggggtatcttccactgaaagttgagctgggccattacttgattcttcctcaatcttggccacctcacccacagaagatgtggatattga |
111 |
Q |
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| T |
25894484 |
catcatcctttggggtatcttccactgaaagttgagctgggccattacttgattcttcctcaatcttggccacctcacccacagaagatgtggatattga |
25894583 |
T |
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| Q |
112 |
tgtagttggtgcattaggagatggtgaactaggaggctttaaatcgggatatctgcaggtatataaaatacacaaggaaaacaaaccacaaatttaggat |
211 |
Q |
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| T |
25894584 |
tgtagttggtgcattaggagatggtgaactaggaggctttaaatcgggatatctgcaggtatataaaatacacaaggaaaacaaaccacaaatttaggat |
25894683 |
T |
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| Q |
212 |
accacggataaaagtgctaaagtagttcataacaaggtatctgccggttttaaatcctcatagctgccaaattaaagaggtttagataggaaattagatg |
311 |
Q |
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| T |
25894684 |
accatggataaaagtgctaaagtagttcataacaaggtatctgcaggttttaaatcctcatagctgccaaattaaagaggtttagataggaaattagatg |
25894783 |
T |
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| Q |
312 |
atagataatgtgtactaacatatgatatcaccacaaaattagaaagcggcttacgctgcaaaaggagaaagagactccttcccttttgaggaagttgttg |
411 |
Q |
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| T |
25894784 |
atagataatgtgtactaacatatgatatcaccacaaaattagaaagcggcttacgctgcaaaaggagaaagagactccttcccttttgaggaagttgttg |
25894883 |
T |
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| Q |
412 |
tctgagaaatgacatctatttctggaatgctacttggagcatctgaagaactaggtgttggcactgcatcactgatatttatctgcttcttgtcact |
508 |
Q |
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| T |
25894884 |
tctgagaaatgacatttatttctggaatgctacttggagcatctgaagaactaggtgttggcactgcatcactgatatttatctgcttcttgtcact |
25894980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 25893491 - 25893543
Alignment:
| Q |
110 |
gatgtagttggtgcattaggagatggtgaactaggaggctttaaatcgggata |
162 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25893491 |
gatgtatttggtgcattaggagatggtgaactaggaggctttaaatcaggata |
25893543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 25893321 - 25893416
Alignment:
| Q |
12 |
catcatcctttggggtatcttccactgaaagttgagctgggccattacttgattcttcctcaatcttggccacctcacccacagaagatgtggata |
107 |
Q |
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| T |
25893321 |
catcctcctttggtgtatcttccacggagagttgggctggtccattgcttgatactgcatcaatattgggcacctcacccacagaagaagtggata |
25893416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 25893422 - 25893458
Alignment:
| Q |
71 |
tcaatcttggccacctcacccacagaagatgtggata |
107 |
Q |
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||||| |||| |||||||||||||||||||||||||| |
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| T |
25893422 |
tcaatattgggcacctcacccacagaagatgtggata |
25893458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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