View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_4 (Length: 464)
Name: NF17984_low_4
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 10323516 - 10323093
Alignment:
| Q |
17 |
acaaactaccaatgtaaacaaagttgaattcttattctaannnnnnnnatacatgcgtatctttgtcatgtactgatctatcaatgatcagctcctttat |
116 |
Q |
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| T |
10323516 |
acaaactaccaatgtaaacaaagttgaattcttattctaattttttt-atacatgcgtatctttgtcatgtactgatctatcaatgatcagctcctttat |
10323418 |
T |
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| Q |
117 |
attcacaattgtttcaataaatacaatatatttgtaaattgtaataccaccacaaatgtctgatgtgacactacaagtgatccaacttgcgagtcatttt |
216 |
Q |
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| T |
10323417 |
attcacaattgtttcaataaatacaatatatttgtaaattgtaataccaccacaaatgtctgatgtgacactacaagtgatccaacttgcgagtcatttt |
10323318 |
T |
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| Q |
217 |
ataccatattccagtatcttaatgactgaaaaattatttttattttacaatggagaatattttaaagaatagttaatttggtatctaaattatcactctc |
316 |
Q |
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| T |
10323317 |
ataccatattccagtatctta-tgactgaaaaattatttttattttacaatggagagtattttaaagaatagttaatttggtatctaaattatcactctc |
10323219 |
T |
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| Q |
317 |
cgttattttggtggctaaaatatttatatcaactaaaagattctaactatgaaaagtacattaatttagttcctagaatattatgaaaaacaactaattt |
416 |
Q |
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| T |
10323218 |
cgttattttggtggctaaaatatttatatcaactaaaagattctaactatgaaaagtacattaatttagttcctagaatattatgaaaaacaactaattt |
10323119 |
T |
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| Q |
417 |
tgttagctaatggatttagttgaatg |
442 |
Q |
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| T |
10323118 |
tgttagctaatggatttagttgaatg |
10323093 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 14198405 - 14198352
Alignment:
| Q |
368 |
aaaagtacattaatttagttcctagaatattatgaaaaacaactaattttgtta |
421 |
Q |
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| T |
14198405 |
aaaaatacattaatttagtttctaaactattatgaaaaacaatcaattttgtta |
14198352 |
T |
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