View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_5 (Length: 462)
Name: NF17984_low_5
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 54860082 - 54859619
Alignment:
| Q |
1 |
catacacacatttaaatcatgcatcaatactagtactgtataagcagaacaagggagaataggtttaaaagcatgcatcaaataacaattctgagagaag |
100 |
Q |
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| T |
54860082 |
catacacacatttaaatcatgcatcaatactagtactgtataagcagaacaagggagaataggtttaaaagcatgcatcaaataacaattc-gagagaag |
54859984 |
T |
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| Q |
101 |
caatgcgccagagcga----aacaaagcaaaacaagaaatcactaagaatagaagagtagcccaagttaattggaagaatttacactaggaaaaattatg |
196 |
Q |
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| T |
54859983 |
caatgcgccagagcgagcgaaacaaagcaaaacaagaaatcactaagaatagaagagtagcccaagttaattggaagaatttacactaggaaaaattatg |
54859884 |
T |
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| Q |
197 |
ctcatatggttaatgccgacttaaaatatataattgttttcttttcatagaaccagacagacgtacgagagtccagaaaaccaaacatata---cnnnnn |
293 |
Q |
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| T |
54859883 |
ctcatatggttaatgccgacttaaa----ataattgttttcttttcatagaaccagacagacgtacgagagtccagaaaaccaaaaatacaaagcaaaaa |
54859788 |
T |
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| Q |
294 |
nncagagtacaagataaatataaagtacaggtaatgttaaaattaccaatcagtgcagtgatcacactggaccataacttcatcaggattatatggcatc |
393 |
Q |
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| T |
54859787 |
aacagagtacaagataaatataaagtacaggtaatgttaaaattaccaatcagtgcagtgatcacactggaccataacttcatcaggattatatggcatc |
54859688 |
T |
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| Q |
394 |
tcacatttacagtacctgccattaaattttagagcaatgaacattgaacaatatttaagcaagaatcaa |
462 |
Q |
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| T |
54859687 |
tcacatttacagtacctgccattaaattttagagcattgaacattgaacaatatttaagcaagaatcaa |
54859619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 54854751 - 54854670
Alignment:
| Q |
355 |
tcacactggaccataacttcatcaggattatatggcatctcacatttacagtacctgccattaaattttagagcaatgaaca |
436 |
Q |
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| T |
54854751 |
tcacactgaaccatcagatcatcagggttgtagggcatctcacatttacaatacctgccatgaaaattttgagcaatgaaca |
54854670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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