View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17984_low_6 (Length: 407)
Name: NF17984_low_6
Description: NF17984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17984_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 20231909 - 20231519
Alignment:
| Q |
1 |
tgaaatatcataattaagaacaaacaacatatataaacataccggggcctacgaagccaacattagtagaaggagaaggtttggcaaaaacaagaacaag |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20231909 |
tgaaatatcataatgaagaacaaacaacatatataaacataccggggcctacgaagccaacattagtagaaggagaaggtttggcaaaaacaagaacaag |
20231810 |
T |
|
| Q |
101 |
tttgaagattggattgggaagtgtagtaaccaaatgatccagagtccattcaagagcgtatgtgctaaattcgctgtcgtcgactccgaccaccatcact |
200 |
Q |
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| T |
20231809 |
tttgaagattggattgggaagtgtagtaaccaaatgatccagagtccattcaagagcgtatgtgctaaattcgctgtcgtcgactccgaccaccatcact |
20231710 |
T |
|
| Q |
201 |
tgcttatctgaaacttgagccatgatgatagatcttgtatcttcaatctattaatagtataatgctattttatacttattattaattgttaatggtgcaa |
300 |
Q |
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| T |
20231709 |
tgcttatctgaaacttgagccatgatgatagatcttgtatcttcaatctattaatagtataatgctattttatacttattattaattgttaatggtgcaa |
20231610 |
T |
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| Q |
301 |
tatgttgttatatatgtaactaataactgtgagag---aagtggtgttgaattgaatttattcatattcggagcatcaaaaggtacgtaactac |
391 |
Q |
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| T |
20231609 |
ta---tgttatatatgtaactaataactatgagagaacaagtggtgttgaattgaatttattcatattcggagcatcaaaagttacgtaactac |
20231519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 44313816 - 44313426
Alignment:
| Q |
1 |
tgaaatatcataattaagaacaaacaacatatataaacataccggggcctacgaagccaacattagtagaaggagaaggtttggcaaaaacaagaacaag |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44313816 |
tgaaatatcataatgaagaacaaacaacatatataaacataccggggcctacgaagccaacattagtagaaggagaaggtttggcaaaaacaagaacaag |
44313717 |
T |
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| Q |
101 |
tttgaagattggattgggaagtgtagtaaccaaatgatccagagtccattcaagagcgtatgtgctaaattcgctgtcgtcgactccgaccaccatcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44313716 |
tttgaagattggattgggaagtgtagtaaccaaatgatccagagtccattcaagagcgtatgtgctaaattcgctgtcgtcgactccgaccaccatcact |
44313617 |
T |
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| Q |
201 |
tgcttatctgaaacttgagccatgatgatagatcttgtatcttcaatctattaatagtataatgctattttatacttattattaattgttaatggtgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44313616 |
tgcttatctgaaacttgagccatgatgatagatcttgtatcttcaatctattaatagtataatgctattttatacttattattaattgttaatggtgcaa |
44313517 |
T |
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| Q |
301 |
tatgttgttatatatgtaactaataactgtgagag---aagtggtgttgaattgaatttattcatattcggagcatcaaaaggtacgtaactac |
391 |
Q |
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|| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44313516 |
ta---tgttatatatgtaactaataactatgagagaacaagtggtgttgaattgaatttattcatattcggagcatcaaaagttacgtaactac |
44313426 |
T |
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