View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17985_high_3 (Length: 345)
Name: NF17985_high_3
Description: NF17985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17985_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 28536931 - 28537185
Alignment:
| Q |
34 |
atcacaggttcaaacctttttcgtgtatagacgtccaaactctttttacacaatgtcctacatgatgcaactattgatttgtttaaggttgaaaaacctc |
133 |
Q |
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| T |
28536931 |
atcacaggttcaaacctttttcgtgtatagacgtccaaactctttttacacaatgtcctacatgatgcaactattgatttgtttaaggttgaaaaacctc |
28537030 |
T |
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| Q |
134 |
aaacatgtttggtcccaatgaaattgagattgaccaatgtcaattcaattgctacaataatatatcctaactcaaaaaggaatatgaaacataagggcca |
233 |
Q |
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| T |
28537031 |
aaacatgtttggtcccaa-------------------tgtcaattcaattgctacaataatatatcctaactcaaaaaggaatgtgaaacataagggcca |
28537111 |
T |
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| Q |
234 |
taatggaccctctcacatgaaaagcatgaaaggaaacaataaattgatatctactatagttattatgagaaata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28537112 |
taatggaccctctcacatgaaaagcatgaaaggaaacaataaattgatatctactatagttattatgagaaata |
28537185 |
T |
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