View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17986_high_6 (Length: 363)
Name: NF17986_high_6
Description: NF17986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17986_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 2165082 - 2164734
Alignment:
| Q |
1 |
aagagagagaaattagtgaaaattgtttgtttcagccatattaattttagctagactaggcaactaatagcctgaaataaagaggtatggagttctactt |
100 |
Q |
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| T |
2165082 |
aagagagagaaattagtgaaaattgtttgtttcagccatattaattttagctagactaggcaactaatagcctgaaataaagaggtatggagttctactt |
2164983 |
T |
|
| Q |
101 |
tccttccttgatatagatggctgttgtatacttgtagttgcactaaacattacaagcataaacataacaannnnnnnnnatagaagttctataattagct |
200 |
Q |
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| T |
2164982 |
tccttccttgatatagatggctgttgtatacttgtagttgcactaaacattacaagcataaacataacaatttttttttatagaagttctataattagct |
2164883 |
T |
|
| Q |
201 |
gctatcacacctcacaaattcaaaagatatggccatgaattataaacaatctcatttcatgttcatgtaacaccaaaagtacacatagatgaccattaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2164882 |
gctatcacacctcacaaattcaaaagatatggccatgaattataaacaatctcatttcatgttcatgtaacaccaaaagtacacatagatgaccattaga |
2164783 |
T |
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| Q |
301 |
gaaaatcactcattgtggcaaatatagctccattgacttatgtacttca |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2164782 |
gaaaatcactcattgtggcaaatatagctccattgacttatgtacttca |
2164734 |
T |
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