View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17986_low_1 (Length: 592)

Name: NF17986_low_1
Description: NF17986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17986_low_1
NF17986_low_1
[»] chr4 (9 HSPs)
chr4 (13-575)||(56294791-56295375)
chr4 (108-163)||(55000627-55000681)
chr4 (79-163)||(49574062-49574147)
chr4 (32-163)||(1865490-1865622)
chr4 (111-163)||(11380271-11380321)
chr4 (108-163)||(50183182-50183236)
chr4 (102-162)||(22405759-22405819)
chr4 (80-163)||(46577489-46577572)
chr4 (135-163)||(51702657-51702685)
[»] chr8 (4 HSPs)
chr8 (54-163)||(36228497-36228605)
chr8 (33-130)||(32318068-32318166)
chr8 (86-163)||(36229324-36229399)
chr8 (110-163)||(39320923-39320975)
[»] chr2 (8 HSPs)
chr2 (13-126)||(25617707-25617820)
chr2 (31-126)||(29647351-29647446)
chr2 (110-163)||(44356805-44356857)
chr2 (111-163)||(3322902-3322953)
chr2 (108-163)||(13913463-13913517)
chr2 (110-163)||(44357599-44357651)
chr2 (103-163)||(38799251-38799309)
chr2 (135-163)||(1677560-1677588)
[»] scaffold0085 (1 HSPs)
scaffold0085 (110-163)||(14947-14999)
[»] chr3 (14 HSPs)
chr3 (110-163)||(45081479-45081531)
chr3 (53-123)||(36497004-36497074)
chr3 (108-163)||(45059775-45059830)
chr3 (110-163)||(37727621-37727672)
chr3 (118-163)||(48058267-48058310)
chr3 (110-163)||(46915786-46915838)
chr3 (53-163)||(36502333-36502441)
chr3 (108-151)||(45082204-45082246)
chr3 (110-163)||(1093163-1093215)
chr3 (110-163)||(25081551-25081603)
chr3 (135-163)||(34832030-34832058)
chr3 (135-163)||(50703733-50703761)
chr3 (135-163)||(50704377-50704405)
chr3 (135-163)||(55336829-55336857)
[»] chr1 (11 HSPs)
chr1 (80-163)||(2071446-2071528)
chr1 (53-123)||(13649493-13649563)
chr1 (75-163)||(26284613-26284699)
chr1 (32-129)||(10919418-10919518)
chr1 (53-123)||(19138872-19138942)
chr1 (42-163)||(23817591-23817710)
chr1 (103-163)||(15418219-15418278)
chr1 (118-163)||(19790832-19790875)
chr1 (118-163)||(50546071-50546114)
chr1 (112-163)||(22914697-22914746)
chr1 (111-163)||(49568896-49568947)
[»] scaffold0025 (1 HSPs)
scaffold0025 (93-147)||(150593-150645)
[»] chr6 (6 HSPs)
chr6 (93-147)||(13111512-13111564)
chr6 (110-163)||(22046418-22046470)
chr6 (110-163)||(22058826-22058878)
chr6 (39-106)||(18094399-18094466)
chr6 (110-163)||(22047212-22047264)
chr6 (110-151)||(1859797-1859837)
[»] chr7 (6 HSPs)
chr7 (32-163)||(43448444-43448575)
chr7 (110-163)||(41115495-41115547)
chr7 (79-149)||(29065401-29065470)
chr7 (86-163)||(17917082-17917157)
chr7 (114-163)||(44545272-44545320)
chr7 (60-163)||(3772588-3772688)
[»] chr5 (7 HSPs)
chr5 (76-163)||(22798485-22798570)
chr5 (118-163)||(33574039-33574082)
chr5 (103-163)||(18861883-18861941)
chr5 (60-163)||(22967143-22967243)
chr5 (134-163)||(10470873-10470902)
chr5 (78-123)||(39933462-39933507)
chr5 (135-163)||(41609497-41609525)
[»] scaffold0006 (1 HSPs)
scaffold0006 (53-123)||(139273-139343)
[»] scaffold1370 (1 HSPs)
scaffold1370 (102-163)||(910-969)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 575
Target Start/End: Complemental strand, 56295375 - 56294791
Alignment:
Q  13 gagatgaagcaggcatatggggaatgaaaaaattatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccct 112  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  56295375 gagaagaagcagacatatgggaaatgaaaaaattatactgtgcagttttaaaatttaagtaacacaataaagattggtctaaggattgcgatttcaccct 56295276  T
Q  113 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatatttgtatt--------------------agtggatactcaatatcataaa 192  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||                     ||||||||||||||||||||||    
T  56295275 ctcatctctcattttaaaa-ggtcctctcacttgatatgccctatatatatatatatatatatatatatatatatatcagtggatactcaatatcataaa 56295177  T
Q  193 tgaaaacagacattatgtttaaatgtaggcaaaactgagttaaagcttaatcaaacatggagaagtcactccaatgagatgaactgaataaaaaggtata 292  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  56295176 tgaaaacagacattatgtttaaatgtaggcaaaaatgagttaa-gcttaatcaaacatggagaagtcactccaatgagatgaactaaataaaaaggtata 56295078  T
Q  293 atttgagcagaacatttttcatataaaatcaaagtagaatcacaatcatagtcataggttaaatttggtaaagcatacaagaatttac------tttcnn 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||       
T  56295077 atttgagcagaacatttttcatataaaatcaaagtagaatcacaatcatagtcataggttaaatttggtaaagcatacaagaatttactttttttttttt 56294978  T
Q  387 nnnnnnaataaattactagttatatagaatagatttatgattatgtttaattgttagtcttactnnnnnnntaatgtgtacgtaatgtgtgaatttactt 486  Q
          ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||       ||||||||| |||||||||||||||||||    
T  56294977 ttttttaataaattaatagttatatagaatagatttatgattatgtttaattgttagttttact--aaaaataatgtgtatgtaatgtgtgaatttactt 56294880  T
Q  487 actttttgagaattatatttctcttgatttaagtgtcaaaatcttaaacgagttattgtattaagggaaggtgcgtggacgtggttgtt 575  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56294879 actttttgagaattatatttctcttaatttaagtgtcaaaatcttaaacgagttattgtattaagggaaggtgcgtggacgtggttgtt 56294791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 55000627 - 55000681
Alignment:
Q  108 accctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  55000627 accctctcatctctcattttaaaa-ggtcctttcacttgatatgccctatatatat 55000681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 49574147 - 49574062
Alignment:
Q  79 ataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgat--atgccctatatatat 163  Q
    |||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||  ||||||||||||||  || ||||||||||||    
T  49574147 ataatgattgatctaagggttgtgatttaaccctctcacctctcattttaagaa-ctcctctcacttgatacattccctatatatat 49574062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 1865622 - 1865490
Alignment:
Q  32 gggaatgaaaaaa---ttatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcatttta 128  Q
    |||||||||||||   ||||||  ||||||||| ||| ||||| | ||||||||||||| ||| ||||||||  || |  ||||||||||||||||||||    
T  1865622 gggaatgaaaaaagatttatacgctgcagtttttaaaattaaggagcacaataaagattaatccaagggttgttatgtatccctctcatctctcatttta 1865523  T
Q  129 aaaaggtcctctcacttgatatgccctatatatat 163  Q
    | |  || |||||| ||||||  ||||||||||||    
T  1865522 aca--gtgctctcatttgatacaccctatatatat 1865490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 11380321 - 11380271
Alignment:
Q  111 ctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||| |||||  |||||||||||||||||| |||||||||||    
T  11380321 ctctcatctctcattataaaa--gtcctctcacttgatatgtcctatatatat 11380271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 50183236 - 50183182
Alignment:
Q  108 accctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||| |||||||  |||||||  ||||||||||||||||||||||||||||    
T  50183236 accctctcacctctcataataaaaagc-cctctcacttgatatgccctatatatat 50183182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 22405819 - 22405759
Alignment:
Q  102 gatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatata 162  Q
    ||||| |||||||||||||| ||| | |||| ||||||||||||||||  || ||||||||    
T  22405819 gatttaaccctctcatctcttattattaaaatgtcctctcacttgatacaccatatatata 22405759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 46577572 - 46577489
Alignment:
Q  80 taaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccct-atatatat 163  Q
    |||||||| |||||||||||  ||||  ||||||||| |||||||  |||||| |  ||||||||||||||||||| ||||||||    
T  46577572 taaagattaatctaagggttaggattcaaccctctcacctctcataataaaaa-gcactctcacttgatatgccctcatatatat 46577489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 51702685 - 51702657
Alignment:
Q  135 tcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||    
T  51702685 tcctctcacttgatatgccctatatatat 51702657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 36228605 - 36228497
Alignment:
Q  54 gcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgcc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36228605 gcagttttaaaatttaagtaacacaataaagattgatctaagggttgtgatttcaccctctcatctctcatttt-aaaaggtcctcttacttgatatgcc 36228507  T
Q  154 ctatatatat 163  Q
    ||||||||||    
T  36228506 ctatatatat 36228497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 32318166 - 32318068
Alignment:
Q  33 ggaatgaaaaa-attatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaa 130  Q
    ||||||||||| |||||||  ||| ||||||||| ||||||||||||||| ||||||||| ||||||||  |||| |||||||||||||||||||||||    
T  32318166 ggaatgaaaaagattatacgttgcggttttaaaaattaagtaacacaatatagattgatccaagggttgtaatttaaccctctcatctctcattttaaa 32318068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 36229324 - 36229399
Alignment:
Q  86 ttgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| | ||  ||||| ||||||  ||||||||||||    
T  36229324 ttgatctaagggttgcgatttaaccctctca-ctctcattttaaata-gtggtctcatttgatacaccctatatatat 36229399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 39320975 - 39320923
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||| | ||| ||| || ||||||||||||||||||||||||||    
T  39320975 cctctcatctctcactataacaag-tcatctcacttgatatgccctatatatat 39320923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 25617707 - 25617820
Alignment:
Q  13 gagatgaagcaggcatatggggaatgaaaaaattatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccct 112  Q
    |||| |||||| ||| | ||||||||||||||||||||  |||| |||| ||| ||||||| ||||||||||||||||  |||||||| |||||  ||||    
T  25617707 gagaagaagcacgcaaaaggggaatgaaaaaattatacgctgcaatttttaaaattaagtagcacaataaagattgattcaagggttgtgatttatccct 25617806  T
Q  113 ctcatctctcattt 126  Q
    |||| |||||||||    
T  25617807 ctcacctctcattt 25617820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 29647351 - 29647446
Alignment:
Q  31 ggggaatgaaaaaattatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcattt 126  Q
    ||||||| ||||||||||||  |||| |||| ||| ||||||| ||||||||||||||||  || ||||| |||||  |||||||| |||||||||    
T  29647351 ggggaataaaaaaattatacgctgcaatttttaaaattaagtagcacaataaagattgattcaaaggttgtgatttatccctctcacctctcattt 29647446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 44356857 - 44356805
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  44356857 cctctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 44356805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 3322953 - 3322902
Alignment:
Q  111 ctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  3322953 ctctcatctctcattttaaaatg-tcctctcacttgatatgccatatatatat 3322902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 13913463 - 13913517
Alignment:
Q  108 accctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||||||||||||    
T  13913463 accctctcatctctcattataagatg-tcctctcacttgatatgccctatatatat 13913517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 44357599 - 44357651
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  44357599 cctctcatctctcattttaacaat-tcctctcacttgatatgtcctatatatat 44357651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 38799251 - 38799309
Alignment:
Q  103 atttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||| ||||||||| ||||||| ||||||  | |||||||||||| |||||||||||||||    
T  38799251 atttaaccctctcacctctcatcttaaaa--gccctctcacttgaaatgccctatatatat 38799309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 1677588 - 1677560
Alignment:
Q  135 tcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||    
T  1677588 tcctctcacttgatatgccctatatatat 1677560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 14947 - 14999
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14947 cctctcatctctcattttaaaa-ggtgctctcacttgatatgccctatatatat 14999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 45081531 - 45081479
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  45081531 cctctcatctctcattttaaaa-ggtgctctcacttgatatgccctatatatat 45081479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 36497074 - 36497004
Alignment:
Q  53 tgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctca 123  Q
    ||||||||||| | |||| ||||||| |||| | |||||||||||||| ||||| ||||||||||||||||    
T  36497074 tgcagttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 36497004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 45059830 - 45059775
Alignment:
Q  108 accctctcatctctcattttaaaaaggtcctctcacttgatatgccct-atatatat 163  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  45059830 accctctcatctctcatttt-aaaaggtcctctcacttgatatgtcctcatatatat 45059775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 37727672 - 37727621
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  37727672 cctctcatctctcattttaaga--gtcctctcatttgatatgccctatatatat 37727621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 48058310 - 48058267
Alignment:
Q  118 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  48058310 ctctcattttaaaa--gtcctctcacttgatatgccctatatatat 48058267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 46915838 - 46915786
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| ||  ||||||||||||||||||| |||||||||    
T  46915838 cctctcatctctcattttaacaac-tcctctcacttgatatgccatatatatat 46915786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 36502333 - 36502441
Alignment:
Q  53 tgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgc 152  Q
    |||| |||| ||| |||| || |||| |||||||| ||| || ||||  ||||  ||||||||||||||||   |||||   ||||||||||||||||||    
T  36502333 tgcaatttttaaaattaaatatcacagtaaagattaatccaatggttaggattaaaccctctcatctctcacaataaaac--tcctctcacttgatatgc 36502430  T
Q  153 cctatatatat 163  Q
    |||||||||||    
T  36502431 cctatatatat 36502441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 45082204 - 45082246
Alignment:
Q  108 accctctcatctctcattttaaaaaggtcctctcacttgatatg 151  Q
    |||||||||||||||||||| ||||| |||||||||||||||||    
T  45082204 accctctcatctctcatttt-aaaagatcctctcacttgatatg 45082246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 1093215 - 1093163
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||| |||  |  |||||||||||||||||||||||||||||    
T  1093215 cctctcatctctcattgtaactac-tcctctcacttgatatgccctatatatat 1093163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 25081551 - 25081603
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||| | ||| ||  |||||||||||||||||||||||||||||    
T  25081551 cctctcatctctcactataacaac-tcctctcacttgatatgccctatatatat 25081603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 34832058 - 34832030
Alignment:
Q  135 tcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||    
T  34832058 tcctctcacttgatatgccctatatatat 34832030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 50703761 - 50703733
Alignment:
Q  135 tcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||    
T  50703761 tcctctcacttgatatgccctatatatat 50703733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 50704377 - 50704405
Alignment:
Q  135 tcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||    
T  50704377 tcctctcacttgatatgccctatatatat 50704405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 55336857 - 55336829
Alignment:
Q  135 tcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||    
T  55336857 tcctctcacttgatatgccctatatatat 55336829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 2071446 - 2071528
Alignment:
Q  80 taaagattgatctaagggttgcgatttcaccctctcatc-tctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||| ||||  ||||| | ||||||| | |||||||||||||  ||||||||||||||||||||||||||||||    
T  2071446 taaagattgatctaaaggttatgatttaatcctctcaccctctcattttaaaa--gtcctctcacttgatatgccctatatatat 2071528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 13649493 - 13649563
Alignment:
Q  53 tgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctca 123  Q
    ||||| ||||||| |||||||||||||| ||||| |||| |||||||| ||||| ||||| ||||||||||    
T  13649493 tgcagatttaaaaattaagtaacacaattaagatggatccaagggttgtgatttaaccctatcatctctca 13649563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 26284699 - 26284613
Alignment:
Q  75 cacaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||| |||||||| |||||||||||| ||||| |||||||||||||||||  |||||  ||  ||||||| |||||| |||||||||||    
T  26284699 cacattaaagattaatctaagggttgtgatttaaccctctcatctctcataataaaa--gtggtctcactcgatatgtcctatatatat 26284613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 10919518 - 10919418
Alignment:
Q  32 gggaatgaaaaaa---ttatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcatttta 128  Q
    |||||||||||||   ||||||  ||||||||| ||| ||||| | ||||||||||||| ||| ||||||||  || |  ||||||||||||||||||||    
T  10919518 gggaatgaaaaaagatttatacgctgcagtttttaaaattaaggagcacaataaagattaatccaagggttgttatgtatccctctcatctctcatttta 10919419  T
Q  129 a 129  Q
    |    
T  10919418 a 10919418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 19138942 - 19138872
Alignment:
Q  53 tgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctca 123  Q
    ||||| ||||||| | ||||||| |||| ||||| |||| |||||||| ||||| ||||||||||||||||    
T  19138942 tgcagatttaaaaatgaagtaactcaattaagatggatccaagggttgtgatttaaccctctcatctctca 19138872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 23817710 - 23817591
Alignment:
Q  42 aaattatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctc 141  Q
    |||||||||  ||||||||| ||| ||||| | ||||||||||||| ||  ||||||||  || |  ||||||||||||||||||||| |  || |||||    
T  23817710 aaattatacgctgcagtttttaaaattaaggagcacaataaagattaattcaagggttgttatgtatccctctcatctctcattttaata--gtgctctc 23817613  T
Q  142 acttgatatgccctatatatat 163  Q
    | ||||||  ||||||||||||    
T  23817612 atttgatacaccctatatatat 23817591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 15418278 - 15418219
Alignment:
Q  103 atttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||| ||| | |||||||||    
T  15418278 atttcaccctctcatctctcattttaaaaa-gtcatctcatttgaaatggcatatatatat 15418219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 19790875 - 19790832
Alignment:
Q  118 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  19790875 ctctcattttaaaac--tcctctcacttgatatgccctatatatat 19790832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 50546071 - 50546114
Alignment:
Q  118 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  50546071 ctctcattttaaaa--gtcctcttacttgatatgccctatatatat 50546114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 22914697 - 22914746
Alignment:
Q  112 tctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||||||||   |||||||||||||||  ||||||||||||    
T  22914697 tctcatctctcattttaaaac--tcctctcacttgatacaccctatatatat 22914746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 49568947 - 49568896
Alignment:
Q  111 ctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||  |  ||||||||| |||||||||||||||||||    
T  49568947 ctctcatctctcattttaactac-tcctctcacatgatatgccctatatatat 49568896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 150645 - 150593
Alignment:
Q  93 aagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttga 147  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  150645 aagggttgcgatttcatcctctcatctctcattttaaaa--gtcctctcacttga 150593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 13111512 - 13111564
Alignment:
Q  93 aagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttga 147  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  13111512 aagggttgcgatttcatcctctcatctctcatttt--aaaggtcctctcacttga 13111564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 22046470 - 22046418
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  22046470 cctctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 22046418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 22058878 - 22058826
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  22058878 cctctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 22058826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 18094399 - 18094466
Alignment:
Q  39 aaaaaattatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgattt 106  Q
    |||||||||||   ||||||||||||| | |||||||||||||||||| ||| ||||||||| |||||    
T  18094399 aaaaaattataggctgcagttttaaaaatgaagtaacacaataaagatggatttaagggttgtgattt 18094466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 22047212 - 22047264
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  22047212 cctctcatctctcattttaacaat-tcctctcacttgatatgtcctatatatat 22047264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 1859797 - 1859837
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatg 151  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  1859797 cctctcatctctcatttt-aaaatgtcctctcacttgatatg 1859837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 43448444 - 43448575
Alignment:
Q  32 gggaatgaaa-aaattatactgtgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctca-tctctcattttaa 129  Q
    |||||||||| ||||||||   |||| |||||||| | ||| |||||||||||||| |||  |||||||| ||||| | |||||||  |||||||||  |    
T  43448444 gggaatgaaacaaattataggctgcaattttaaaaatgaagcaacacaataaagatggattcaagggttgtgatttaatcctctcaccctctcattt--a 43448541  T
Q  130 aaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||| |||| ||| |||||||||||    
T  43448542 aaaggtcctctcatttgaaatgtcctatatatat 43448575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 41115495 - 41115547
Alignment:
Q  110 cctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  41115495 cctctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 41115547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 29065401 - 29065470
Alignment:
Q  79 ataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgata 149  Q
    |||| |||||||| |||||||| ||||| |||||||||  ||||||||||| ||  |||||||||||||||    
T  29065401 ataatgattgatccaagggttgtgatttaaccctctcacttctcattttaagaa-ctcctctcacttgata 29065470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 17917157 - 17917082
Alignment:
Q  86 ttgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||| | || |||||| ||||||   |||||||||||    
T  17917157 ttgatctaagggttgtgatttaaccctctca-ctctcattttaaata-gtgctctcatttgatacatcctatatatat 17917082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 44545272 - 44545320
Alignment:
Q  114 tcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||| ||  || ||||||||||||||||||||||||||    
T  44545272 tcatctctcattttaacaac-tcatctcacttgatatgccctatatatat 44545320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 3772688 - 3772588
Alignment:
Q  60 ttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatat 159  Q
    |||||||| ||| ||||||||||||||| |||||| |||   ||| | ||||||||||||||||   ||||||   ||||||| |||||||||||| |||    
T  3772688 ttaaaattaaag-aacacaataaagattaatctaatggtcaggatctaaccctctcatctctcacaataaaaa--acctctcatttgatatgccctctat 3772592  T
Q  160 atat 163  Q
    ||||    
T  3772591 atat 3772588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 22798570 - 22798485
Alignment:
Q  76 acaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||||||||||| |||||||||||| |||||  ||||||||| ||||||||  |||| ||||||||| ||||||   |||||||||||    
T  22798570 acaataaagattaatctaagggttgagatttatccctctcatttctcattt--aaaatgtcctctcatttgatacatcctatatatat 22798485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 33574039 - 33574082
Alignment:
Q  118 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  33574039 ctctcattttaaaa--gtcctctcacttgatatgccctatatatat 33574082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 18861941 - 18861883
Alignment:
Q  103 atttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    |||| ||||||||| ||||||||||||||  |||||||||||||| ||||| |||||||||    
T  18861941 atttaaccctctcacctctcattttaaaa--gtcctctcacttgaaatgccatatatatat 18861883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 22967143 - 22967243
Alignment:
Q  60 ttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatat 159  Q
    |||||||| ||| ||||||||||| ||| |||||| |||   ||| | ||||||||||||||||   ||||||   ||||||||||||||||||||||||    
T  22967143 ttaaaattaaag-aacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaa--cctctcacttgatatgccctatat 22967239  T
Q  160 atat 163  Q
    ||||    
T  22967240 atat 22967243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 10470873 - 10470902
Alignment:
Q  134 gtcctctcacttgatatgccctatatatat 163  Q
    ||||||||||||||||||||||||||||||    
T  10470873 gtcctctcacttgatatgccctatatatat 10470902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 39933507 - 39933462
Alignment:
Q  78 aataaagattgatctaagggttgcgatttcaccctctcatctctca 123  Q
    |||||||||||||| |||||||  ||||| ||||||||||||||||    
T  39933507 aataaagattgatcaaagggttatgatttaaccctctcatctctca 39933462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 41609525 - 41609497
Alignment:
Q  135 tcctctcacttgatatgccctatatatat 163  Q
    |||||||||||||||||||||||||||||    
T  41609525 tcctctcacttgatatgccctatatatat 41609497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 139273 - 139343
Alignment:
Q  53 tgcagttttaaaatttaagtaacacaataaagattgatctaagggttgcgatttcaccctctcatctctca 123  Q
    ||||| ||||||| | ||||||| |||| ||||| |||| |||||||| ||||| ||||||||||||||||    
T  139273 tgcagatttaaaaatgaagtaactcaattaagatggatccaagggttgtgatttaaccctctcatctctca 139343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 910 - 969
Alignment:
Q  102 gatttcaccctctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 163  Q
    ||||| ||||||||||||||||||||||||   |||||||||||||||  |||| |||||||    
T  910 gatttaaccctctcatctctcattttaaaa--ttcctctcacttgatacaccctctatatat 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University