View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17986_low_12 (Length: 228)

Name: NF17986_low_12
Description: NF17986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17986_low_12
NF17986_low_12
[»] chr3 (11 HSPs)
chr3 (2-228)||(2759050-2759276)
chr3 (1-228)||(2838675-2838905)
chr3 (1-228)||(2768905-2769132)
chr3 (6-228)||(2855890-2856112)
chr3 (1-200)||(2807134-2807330)
chr3 (1-228)||(2818393-2818620)
chr3 (1-199)||(2748863-2749058)
chr3 (3-199)||(2790232-2790428)
chr3 (1-119)||(5412831-5412949)
chr3 (11-199)||(2797226-2797414)
chr3 (157-228)||(5412743-5412814)
[»] scaffold0691 (1 HSPs)
scaffold0691 (5-228)||(6231-6454)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 2759276 - 2759050
Alignment:
Q  2 accctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2759276 accctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccat 2759177  T
Q  102 cttccattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgt 201  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2759176 cttccattttctttctcttcggtagtgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgt 2759077  T
Q  202 gaattgtcagcttgatgtcttgaatct 228  Q
    |||||||||||||||||||||||||||    
T  2759076 gaattgtcagcttgatgtcttgaatct 2759050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2838675 - 2838905
Alignment:
Q  1 caccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgcca 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||    
T  2838675 caccctccaataaccaaccatatatttcttctcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgcca 2838774  T
Q  101 tcttccattttctttctcttcgg---tactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgatt 197  Q
    |||||||||||||  |||| | |   | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  2838775 tcttccattttctgcctctccaggactgctgttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgatt 2838874  T
Q  198 ccgtgaattgtcagcttgatgtcttgaatct 228  Q
    |||||| ||||||||||||||||||||||||    
T  2838875 ccgtgagttgtcagcttgatgtcttgaatct 2838905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2769132 - 2768905
Alignment:
Q  1 caccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgcca 100  Q
    |||||||||||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||  ||||||||||||||    
T  2769132 caccctccaataaccaaccaaataattcttctcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgcca 2769033  T
Q  101 tcttccattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccg 200  Q
    ||||||| |||||  |||| |  ||||||| ||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||     
T  2769032 tcttccactttctgactctccactactgttcctgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattcca 2768933  T
Q  201 tgaattgtcagcttgatgtcttgaatct 228  Q
     |||||| || ||| ||||| |||||||    
T  2768932 cgaattgacaacttaatgtcctgaatct 2768905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 2855890 - 2856112
Alignment:
Q  6 tccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttc 105  Q
    ||||||||||||||| | | ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2855890 tccaataaccaaccagacaattcttcttttgggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttc 2855989  T
Q  106 cattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaat 205  Q
    |||||||| ||||| |  | | ||| ||   | ||||||||||||| || | ||||||||||||||||||||||  ||||||||||||||||||  ||||    
T  2855990 cattttctgtctctccactgcggtttctttggcttgaggatccttgctcgtgtgaaatttgaaagttatacctctggcttctttccttgattccacgaat 2856089  T
Q  206 tgtcagcttgatgtcttgaatct 228  Q
    || || ||||||||| |||||||    
T  2856090 tgacaacttgatgtcctgaatct 2856112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 2807330 - 2807134
Alignment:
Q  1 caccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgcca 100  Q
    ||||||||||||||||| || | | ||||||| |||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  2807330 caccctccaataaccaaacagacatttcttctcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgcca 2807231  T
Q  101 tcttccattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccg 200  Q
    ||||||||||||| |||||   || ||||||| ||   |||| ||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||    
T  2807230 tcttccattttctgtctctctagtgctgttgcggc---ttgatgatccttgttcatgtgaaatttgtaagttatacctctcacttctttccttgattccg 2807134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2818620 - 2818393
Alignment:
Q  1 caccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgcca 100  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2818620 caccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgcca 2818521  T
Q  101 tcttccattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccg 200  Q
    || |||  | |||  |||| |    | ||||||   |   ||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||     
T  2818520 tcctcctgtgtctgactctccacatccgttgctttggcacgaggatccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattcca 2818421  T
Q  201 tgaattgtcagcttgatgtcttgaatct 228  Q
     |||||| || ||||||||| |||||||    
T  2818420 cgaattgacaacttgatgtcctgaatct 2818393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 2749058 - 2748863
Alignment:
Q  1 caccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgcca 100  Q
    |||| ||||||||||||||| | ||||||||||||||| ||||||  || |||| ||||||||||||||| ||||| |||||||||||||||||| ||||    
T  2749058 caccatccaataaccaaccagacagttcttcttttgggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgcca 2748959  T
Q  101 tcttccattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattcc 199  Q
    | ||||||||||| ||||| |  | ||  ||||||   |||| | ||||||||| | |||||||||||||||||||||| | |||||||||||||||||    
T  2748958 ttttccattttctctctctcctatgctaatgctgc---ttgaagttccttgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattcc 2748863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 2790428 - 2790232
Alignment:
Q  3 ccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatc 102  Q
    |||||||||||||||||| | | ||||||  | |||||||||||||| |||||| | |||||||||||||||||||||||||  ||||||||| ||||||    
T  2790428 ccctccaataaccaaccagacaattcttccctcgggccttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatc 2790329  T
Q  103 ttccattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattcc 199  Q
    ||| ||| ||  |||||    | |||||||||||| |||| |||||| ||   | |||||||||||||||||||||| | |||||||||||||||||    
T  2790328 ttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattcc 2790232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5412949 - 5412831
Alignment:
Q  1 caccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgcca 100  Q
    |||| ||||||||||||||| | | |||||||||||| ||||||| |||||||| ||||||||||  |||||| |||||||||||||||||||| |||||    
T  5412949 caccatccaataaccaaccagacaattcttcttttggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgcca 5412850  T
Q  101 tcttccattttctttctct 119  Q
    ||||||||||||| |||||    
T  5412849 tcttccattttctgtctct 5412831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 2797414 - 2797226
Alignment:
Q  11 taaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattt 110  Q
    |||||||||| | | ||||||  | |||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| |||     
T  2797414 taaccaaccagacaattcttccctcgggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctatta 2797315  T
Q  111 tctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattcc 199  Q
    ||  |||||    | |||||| ||||| |||| |||||| ||   | |||||||||||||||||||||| | |||||||||||||||||    
T  2797314 tccgtctctctactgctgttgttgctgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattcc 2797226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 5412814 - 5412743
Alignment:
Q  157 ttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatct 228  Q
    ||||||||||||||||||||||| | |||||||||||||||||  |||||| || ||| ||||| |||||||    
T  5412814 ttgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatct 5412743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 6231 - 6454
Alignment:
Q  5 ctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatctt 104  Q
    |||||||||||||||||||| ||| ||| |||||||||| |||||||||| ||| ||||||||||| ||||||| ||| | |||||||||||||||||||    
T  6231 ctccaataaccaaccatataattcctctcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatctt 6330  T
Q  105 ccattttctttctcttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaa 204  Q
    |||||||||  |||| | || ||| |||||    |||| |||||  |||||| | |||||||||||||||||||  | ||||| |||||||||||  |||    
T  6331 ccattttctgcctctcctgtgctgctgctgacacttgatgatccaggttcatgtaaaatttgaaagttatacctttcacttctgtccttgattccacgaa 6430  T
Q  205 ttgtcagcttgatgtcttgaatct 228  Q
    ||| |||||| ||||| |||||||    
T  6431 ttgacagctttatgtcctgaatct 6454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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