View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17986_low_3 (Length: 429)

Name: NF17986_low_3
Description: NF17986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17986_low_3
NF17986_low_3
[»] chr7 (21 HSPs)
chr7 (99-414)||(30465963-30466278)
chr7 (99-414)||(3962823-3963138)
chr7 (99-414)||(25611892-25612207)
chr7 (175-414)||(23361661-23361899)
chr7 (99-414)||(42851260-42851575)
chr7 (99-415)||(9360038-9360354)
chr7 (99-414)||(24268251-24268565)
chr7 (216-400)||(4595573-4595757)
chr7 (334-414)||(5865764-5865844)
chr7 (230-396)||(35827015-35827181)
chr7 (12-58)||(4187686-4187732)
chr7 (24-62)||(23150657-23150695)
chr7 (17-58)||(28256575-28256616)
chr7 (17-53)||(20101908-20101944)
chr7 (12-58)||(21412948-21412994)
chr7 (24-58)||(33235056-33235090)
chr7 (24-58)||(36566420-36566454)
chr7 (24-62)||(40904709-40904747)
chr7 (18-58)||(1286806-1286846)
chr7 (12-60)||(29591113-29591161)
chr7 (18-62)||(34951305-34951349)
[»] scaffold0607 (1 HSPs)
scaffold0607 (99-414)||(4964-5280)
[»] chr4 (12 HSPs)
chr4 (99-414)||(26429721-26430036)
chr4 (100-414)||(54551903-54552216)
chr4 (99-401)||(48445941-48446243)
chr4 (218-397)||(33845722-33845901)
chr4 (286-415)||(17424350-17424479)
chr4 (99-384)||(22359789-22360074)
chr4 (177-366)||(26006640-26006829)
chr4 (345-414)||(35852700-35852769)
chr4 (19-62)||(35046550-35046593)
chr4 (17-63)||(41735829-41735875)
chr4 (18-60)||(42115652-42115694)
chr4 (347-400)||(9034441-9034494)
[»] chr1 (11 HSPs)
chr1 (99-414)||(46091087-46091400)
chr1 (274-414)||(15303114-15303254)
chr1 (24-58)||(39302756-39302790)
chr1 (24-58)||(44964022-44964056)
chr1 (12-62)||(48352738-48352788)
chr1 (12-63)||(10686710-10686761)
chr1 (28-62)||(35701519-35701553)
chr1 (32-62)||(49650591-49650621)
chr1 (17-58)||(44964075-44964116)
chr1 (18-58)||(8902843-8902883)
chr1 (26-62)||(27351129-27351165)
[»] chr8 (13 HSPs)
chr8 (99-414)||(32577332-32577647)
chr8 (156-410)||(5839121-5839371)
chr8 (99-396)||(32283312-32283609)
chr8 (17-58)||(34686908-34686949)
chr8 (12-58)||(25737614-25737660)
chr8 (15-51)||(14871027-14871063)
chr8 (18-58)||(25730134-25730174)
chr8 (24-62)||(8713863-8713901)
chr8 (12-58)||(36359982-36360028)
chr8 (17-62)||(25737121-25737166)
chr8 (18-62)||(13771878-13771922)
chr8 (18-58)||(30576671-30576711)
chr8 (18-58)||(31169496-31169536)
[»] chr6 (5 HSPs)
chr6 (99-414)||(32956733-32957048)
chr6 (99-414)||(7436064-7436378)
chr6 (188-414)||(7607272-7607498)
chr6 (12-62)||(17180135-17180185)
chr6 (12-52)||(20575500-20575540)
[»] chr5 (16 HSPs)
chr5 (99-414)||(9610031-9610346)
chr5 (99-413)||(29242637-29242951)
chr5 (99-414)||(30797327-30797642)
chr5 (177-414)||(27452998-27453235)
chr5 (12-58)||(18951385-18951431)
chr5 (18-63)||(20728605-20728650)
chr5 (17-58)||(20729045-20729086)
chr5 (17-63)||(1722517-1722563)
chr5 (17-63)||(18249035-18249081)
chr5 (12-58)||(32660281-32660327)
chr5 (17-58)||(18951325-18951366)
chr5 (17-62)||(36418401-36418446)
chr5 (18-62)||(1722578-1722622)
chr5 (12-52)||(6336171-6336211)
chr5 (18-62)||(30737818-30737862)
chr5 (18-62)||(35891263-35891307)
[»] scaffold0016 (1 HSPs)
scaffold0016 (99-407)||(186420-186729)
[»] scaffold0577 (1 HSPs)
scaffold0577 (99-414)||(2728-3043)
[»] chr3 (8 HSPs)
chr3 (99-414)||(43018884-43019199)
chr3 (99-414)||(51192401-51192716)
chr3 (177-407)||(21689113-21689343)
chr3 (176-414)||(13443522-13443760)
chr3 (322-415)||(55219174-55219267)
chr3 (228-412)||(23483994-23484177)
chr3 (99-169)||(23483868-23483937)
chr3 (99-160)||(13441466-13441527)
[»] chr2 (14 HSPs)
chr2 (99-414)||(38452222-38452537)
chr2 (99-408)||(10213114-10213423)
chr2 (177-401)||(23770317-23770541)
chr2 (99-414)||(23797243-23797554)
chr2 (334-414)||(24477985-24478065)
chr2 (327-414)||(23408219-23408306)
chr2 (17-62)||(30907151-30907196)
chr2 (21-51)||(39301889-39301919)
chr2 (18-63)||(15506507-15506552)
chr2 (223-360)||(27177138-27177275)
chr2 (17-58)||(31264006-31264047)
chr2 (17-58)||(34336116-34336157)
chr2 (18-58)||(11871753-11871793)
chr2 (18-58)||(30907316-30907356)
[»] scaffold0200 (1 HSPs)
scaffold0200 (99-401)||(27480-27781)
[»] scaffold0011 (1 HSPs)
scaffold0011 (99-400)||(57694-57995)
[»] scaffold0004 (1 HSPs)
scaffold0004 (177-401)||(215838-216062)
[»] scaffold0201 (1 HSPs)
scaffold0201 (232-412)||(20084-20263)
[»] scaffold1351 (1 HSPs)
scaffold1351 (353-414)||(1929-1990)
[»] scaffold0746 (2 HSPs)
scaffold0746 (12-58)||(531-577)
scaffold0746 (18-62)||(39-83)
[»] scaffold0070 (1 HSPs)
scaffold0070 (12-58)||(28626-28672)
[»] scaffold0041 (1 HSPs)
scaffold0041 (24-62)||(45271-45309)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 99 - 414
Target Start/End: Original strand, 30465963 - 30466278
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||  | ||||||  |||||||||||||||||||| ||    
T  30465963 tgtgatgattttggagaggataacactcacttgttctttatgtgtagtaaaagtatgctttgttgccaacatattgacttatggagccctttgatggttg 30466062  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||    
T  30466063 tttttgatattaatgtcagctttccaaccaatgtatttgctatcctacaacacctggatcagcagcaaaagcaacttttcagtgtgaccctttgaagtat 30466162  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30466163 ttgaaagcatcgaaacaataaggtatgaaacaacattactgaaacagctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgct 30466262  T
Q  399 cagaatattcgacatc 414  Q
    |||||||||| |||||    
T  30466263 cagaatattcaacatc 30466278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 3963138 - 3962823
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    ||||||||||| |||||||||| ||  ||||||||||||| ||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||    
T  3963138 tgtgatgatttcggagaggatagcaaccatttgttctttatgtgtagtaaaagtatgctttgttggcaacgtattggcttatggagccctttgatggctg 3963039  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  3963038 tctttgatattaatgtcagttttccaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaatcttcagtgtgaccctttggagtat 3962939  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  3962938 ttggaagcatcgaaacaataaggtatggaacaacatcactgatacagctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgct 3962839  T
Q  399 cagaatattcgacatc 414  Q
    ||||||||||| ||||    
T  3962838 cagaatattcggcatc 3962823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 25612207 - 25611892
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    ||||||||||| |||||||||| ||  ||||||||||||| ||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| ||    
T  25612207 tgtgatgatttcggagaggatagcaaccatttgttctttatgtgtagtaaaagtatgctttgttggcaacgtattggcttatggagccctttgatggttg 25612108  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  25612107 tctttgatattaatgtcagttttccaaccaatgtatttgctatcctacaacacctggatcagcagcaaaagcaaattttcaatgtgaccctttggagtat 25612008  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  25612007 ttggaagcatcgaaacaataaggcatggaacaacatcactgatacagctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgct 25611908  T
Q  399 cagaatattcgacatc 414  Q
    ||||||||||| ||||    
T  25611907 cagaatattcggcatc 25611892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 175 - 414
Target Start/End: Original strand, 23361661 - 23361899
Alignment:
Q  175 gcttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaat 274  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23361661 gcttatggagccctttgatggctgtctttgatattaatgtcagctttccaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaac 23361760  T
Q  275 tttcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttct 374  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||| | |||| |||||    
T  23361761 tttcagtgtga-cctttggagtatttggaagcatcgaaacaataaggtatggaacaacatcactgatacaactcaagatatttgtgctcatgcaagttct 23361859  T
Q  375 cttcttactagctggaggaatgctcagaatattcgacatc 414  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  23361860 cttcttactagctggaggaatgctcaaaatattcgacatc 23361899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 99 - 414
Target Start/End: Original strand, 42851260 - 42851575
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||| || |||||||| |||| ||||| |||||| | | |||||||| | | || | | |||||||  | ||||||| |||    
T  42851260 tgtgatgattttggtgaggataatacccatttgttttttatgtgtaataaaagcaagatttgttggcaacgtagtggattatggaatcttttgatgactg 42851359  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||| |  ||  || ||| |||||||||||||||||||| || |||||||||| ||||| ||||||||| | ||||| |||||||||||||||||    
T  42851360 tttttgatagttctgcaagttttccaaccaatgtgtttgctatcttataacacctggaccagcaacaaaagcaagtattcagtgtgaccctttagagtat 42851459  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  42851460 atggaagcatcgaaacaataaggtatggaacaatgttactgaaacagctcaagatatttgtactcgtgcaggatctcttcttactagttggaggaatgct 42851559  T
Q  399 cagaatattcgacatc 414  Q
    |||| |||||| ||||    
T  42851560 cagactattcgtcatc 42851575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 99 - 415
Target Start/End: Original strand, 9360038 - 9360354
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||| |||||||  ||||||  || ||| |||||||||||||   |||||| | | |||||||| |||  | | | ||||| || | |||||||||||    
T  9360038 tgtgattattttggcaaggatagtacccatctgttctttacgtgggataaaagcaagatttgttggcagcggagtggattatgaagtcttttgatggctg 9360137  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||| |||  |||||| ||||||||||||||||||||  | ||||||| || || |||||||||||| ||||||| |||||||| | ||||||    
T  9360138 tttttgatattgatgcaagctttccaaccaatgtgtttgctatctcataacaccttgaccaacagcaaaagcaagttttcagtgtgaccctctggagtat 9360237  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     |||||||||||||||||||| ||||||| |||  ||||||||||||||||| || ||||||| |||||| | |||||||||||||| |||||||||||     
T  9360238 atggaagcatcgaaacaataaagtatggaccaatgttactgaaacagctcaatctgtttgtgctcgtgcatgatctcttcttactagttggaggaatgcc 9360337  T
Q  399 cagaatattcgacatct 415  Q
    |||  |||||| |||||    
T  9360338 cagtctattcgtcatct 9360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 24268565 - 24268251
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||| ||||| || ||||  |||||| ||||||||| |||||||||||| |||||||||||| |||| ||| |||||||||||||||||||| |||    
T  24268565 tgtgatgaatttggtgaagatagtactcatatgttctttatgtgtagtaaaagcatgctttgttggcagcacattggcttatggagccctttgatgtctg 24268466  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
      ||||||| ||||   |||||| || || |||||||||||||  ||||||| ||||||||||||||||||||| | ||  | | ||| || | ||||||    
T  24268465 cctttgatactaatacaagctttccacccgatgtgtttgctattttacaacatctggatcagcagcaaaagcaagtatttggtgggactctatggagtat 24268366  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     |||||||| | ||||||||||||||| |||||  ||||||| ||||||||| |||| ||||  ||| ||||||| ||||||||||||  ||||||||||    
T  24268365 atggaagcaccaaaacaataaggtatgaaacaatgttactgatacagctcaaactatctgtgatcgttcaggttc-cttcttactagccagaggaatgct 24268267  T
Q  399 cagaatattcgacatc 414  Q
    |||| |||||| ||||    
T  24268266 cagattattcgtcatc 24268251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 216 - 400
Target Start/End: Complemental strand, 4595757 - 4595573
Alignment:
Q  216 agcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtatttggaagcatcgaaaca 315  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||| |||| ||||| |||||| ||||||||||||||||    
T  4595757 agctttccaaccaatgtgtttgctatcttacaacacccggaccagcagcaaaagcaagttttcagtgtgatcctttggagtatatggaagcatcgaaaca 4595658  T
Q  316 ataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctca 400  Q
    | || |||||||||||  ||||||||  |||||||||||||||||| | |||| | | |||||||||||| ||||||||||||||    
T  4595657 acaaagtatggaacaatgttactgaactagctcaagctatttgtgctcctgcacgatttcttcttactagttggaggaatgctca 4595573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 5865764 - 5865844
Alignment:
Q  334 ttactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgacatc 414  Q
    |||||||||||||||||||||||||| | |||| | |||||||||||||||| |||| ||||||| ||| |||||| ||||    
T  5865764 ttactgaaacagctcaagctatttgtcctcgtgtaagttctcttcttactagttggaagaatgcttagactattcgtcatc 5865844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 396
Target Start/End: Original strand, 35827015 - 35827181
Alignment:
Q  230 tgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaac 329  Q
    ||||||||||||| | ||||| || |||||||||||  | ||||| ||  | ||||| |||| |||||| |||||||||  ||| || ||||| ||||||    
T  35827015 tgtgtttgctatctttcaacatctcgatcagcagcagcaacaaatctttggtgtgactctttggagtatctggaagcatataaataacaaggtttggaac 35827114  T
Q  330 aacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatg 396  Q
    ||  | || |||||||||||| ||||||||  ||||| ||||||  |||| |||||||||| |||||    
T  35827115 aatgtcaccgaaacagctcaaactatttgttaacgtgtaggttcctttctcactagctggatgaatg 35827181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 4187686 - 4187732
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  4187686 atgacctatttaaaacttttaaaatttaaaggactaacttgaaaatt 4187732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 23150695 - 23150657
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  23150695 aaactttcaaaatttaaaggactaacttgagaattatgt 23150657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 28256616 - 28256575
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  28256616 ctatttgaaacttttgaaatttaaaggactaacttgagaatt 28256575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 20101944 - 20101908
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttga 53  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20101944 ctatttaaaacttttaaaacttaaaggactaacttga 20101908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21412994 - 21412948
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||| ||||||||||||||| ||| ||||||||||||||||| ||||    
T  21412994 atgatctatttaaaacttttgaaacttaaaggactaacttgaaaatt 21412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 33235090 - 33235056
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||||||||||||||||||| |||||||||||||    
T  33235090 aaacttttaaaatttaaaggattaacttgagaatt 33235056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 36566454 - 36566420
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||||| ||||||||||||||||||||||||||    
T  36566454 aaacttttgaaatttaaaggactaacttgagaatt 36566420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 40904747 - 40904709
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  40904747 aaacttttaaaacttaaaagactaacttgagaattatgt 40904709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 1286806 - 1286846
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||||||||||||||| |||||||||||| |||| ||||    
T  1286806 tatttaaaacttttaaaacttaaaggactaatttgaaaatt 1286846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 29591113 - 29591161
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaattat 60  Q
    |||| ||| ||||||||||| ||| ||||||||||||||||| ||||||    
T  29591113 atgacctaattaaaacttttgaaacttaaaggactaacttgataattat 29591161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 34951349 - 34951305
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    ||||| |||||||| ||| ||||||||||||||| ||||||||||    
T  34951349 tatttgaaacttttgaaacttaaaggactaacttaagaattatgt 34951305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 99 - 414
Target Start/End: Original strand, 4964 - 5280
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| ||    
T  4964 tgtgatgatattggagaggatagcactcatttgttctttatgtgtagtaaaagtatgctttgttggcaacgtattggcttatggagccctttgatggttg 5063  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  5064 ttttttatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcaacaaaagcaaattttcagtgtgaccctttggagtat 5163  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttact-agctggaggaatgc 397  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||| |||| ||||    
T  5164 ttggaagcatcgaaacaataaggtagagaacaacattactgaaacagctcaagctatttatgctcgtgcaggttctcatcttactaagctagaggcatgc 5263  T
Q  398 tcagaatattcgacatc 414  Q
    |||||||||||||||||    
T  5264 tcagaatattcgacatc 5280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 26430036 - 26429721
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||    
T  26430036 tgtgatgattttggagaggatagcaaccatttgttctttatgtgtagtaaaagtatgctttgttggcaacgtattggcttatggagccctttgatggctg 26429937  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  26429936 tctttgatatcaatgtcagttttccaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaatcttcagtgtgaccctttggagtat 26429837  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26429836 ttggaagcatcgaaacaataaggtatggaacaacatcactgatacaactcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgct 26429737  T
Q  399 cagaatattcgacatc 414  Q
    ||||||||||| ||||    
T  26429736 cagaatattcggcatc 26429721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 100 - 414
Target Start/End: Original strand, 54551903 - 54552216
Alignment:
Q  100 gtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctgt 199  Q
    ||||||||||||  ||||||| ||| ||||| ||||||| ||||| |||||| ||| |||||||| ||| || | | |||||||  | |||||||||| |    
T  54551903 gtgatgattttgctgaggatagcacccatttattctttatgtgtaataaaagcatgatttgttggcagcgtagtggattatggattcttttgatggctat 54552002  T
Q  200 ttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtatt 299  Q
    |||| ||||| || | || ||| ||||||| |||||||||||| |||||||||||||||| || ||||||||| ||||||| ||||||| |  ||||||     
T  54552003 tttttatattgatttaagttttccaaccaacgtgtttgctatcttacaacacctggatcaacaacaaaagcaagttttcagtgtgacccctg-gagtata 54552101  T
Q  300 tggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctc 399  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||| |||| ||| | |||||||||||| |||||||||||||    
T  54552102 tggaagcatcgaaacaataaggtatggaacaatgttactaaaacagctcaagctatttgtgctcgtgtaggatgtcttcttactagatggaggaatgctc 54552201  T
Q  400 agaatattcgacatc 414  Q
    ||| |||||| ||||    
T  54552202 agactattcgtcatc 54552216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 99 - 401
Target Start/End: Original strand, 48445941 - 48446243
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||| ||||||||| |||||||  || ||| ||||||||| ||||  |||||| | | |||||||| |||  | | | |||||||| | ||||||| |||    
T  48445941 tgtgttgattttggcgaggatagtacccatctgttctttatgtgtgataaaagaaagatttgttggcagcggagtggattatggagtcttttgatgactg 48446040  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||| |||  |||||| |||| ||||||||||||||| ||||||||||||| ||||| ||||| ||| ||||||| || || || | ||||||    
T  48446041 tttttgatattgatgcaagctttccaacaaatgtgtttgctatcttacaacacctggaccagcaacaaaaacaagttttcagtgtaactctctggagtat 48446140  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     |||||||||||||| ||||| |||||||||||  | |||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||    
T  48446141 atggaagcatcgaaataataaagtatggaacaatgtcactgaaacagctcaagctatttgttctcgtgcaggatctcttcttactagttggaggaatgct 48446240  T
Q  399 cag 401  Q
    |||    
T  48446241 cag 48446243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 218 - 397
Target Start/End: Original strand, 33845722 - 33845901
Alignment:
Q  218 cttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtatttggaagcatcgaaacaat 317  Q
    |||| ||||||||||||||| |||| |||||||||||||||| || ||||| ||| ||||||| |||||||| | |||||| |||||||||||||||||     
T  33845722 ctttccaaccaatgtgtttgttatcttacaacacctggatcaacaacaaaaacaagttttcagtgtgaccctctggagtatatggaagcatcgaaacaac 33845821  T
Q  318 aaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgc 397  Q
    || ||||| |||||  || |||||||||||||||| |||||||  |||||||| ||| |||||||||| |||||||||||    
T  33845822 aaagtatgaaacaatgttgctgaaacagctcaagccatttgtgttcgtgcaggatcttttcttactagttggaggaatgc 33845901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 286 - 415
Target Start/End: Complemental strand, 17424479 - 17424350
Alignment:
Q  286 ccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactag 385  Q
    |||||| |||||| |||||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  17424479 ccctttggagtatatggaagcatcgaaacaataaggtatgtaacaatgttactgaaacagcttaagctatttgtgctcgtgcaagttctcttcttactag 17424380  T
Q  386 ctggaggaatgctcagaatattcgacatct 415  Q
     |||||||||||||||| |||||| |||||    
T  17424379 atggaggaatgctcagactattcgtcatct 17424350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 99 - 384
Target Start/End: Complemental strand, 22360074 - 22359789
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||  || ||| ||||||||| ||||  |||||| | | |||||||| | |  | | | |||||||| | |||||||||      
T  22360074 tgtgatgattttggtgaggatagtacccatatgttctttatgtgtgataaaagcaagatttgttggcaacggagtggattatggagtcttttgatggcaa 22359975  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
     |||||||||| |||  | |||| |||||||||||||||||||| |||||||||  || ||| | ||||||||| ||||||| |||| ||| | ||||||    
T  22359974 cttttgatattgatgcaacctttccaaccaatgtgtttgctatcttacaacaccgagaccagtaacaaaagcaagttttcagtgtgatcctctggagtat 22359875  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttacta 384  Q
     |||||||||||||||||||| ||||| |||||  ||||||||||| |||||||||||||||| | |||| | ||||||| |||||    
T  22359874 atggaagcatcgaaacaataaagtatgaaacaatgttactgaaacaactcaagctatttgtgctcatgcaagatctcttcctacta 22359789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 366
Target Start/End: Complemental strand, 26006829 - 26006640
Alignment:
Q  177 ttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattt 276  Q
    |||||||| | |||||| | |||||||||| || |||  || ||| |||||||||||||| ||||| |||||||||| || ||||| ||||||||| |||    
T  26006829 ttatggagtcttttgattgttgtttttgatgttgatgcaagttttccaaccaatgtgttttctatcttacaacaccttgaccagcaacaaaagcaagttt 26006730  T
Q  277 tcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtg 366  Q
    |||| |||||||| | || ||| ||||||||||||||| |||| ||||| |||||  |||||||||||||| ||||||||||||| ||||    
T  26006729 tcagtgtgaccctctggactatatggaagcatcgaaactataaagtatgtaacaatgttactgaaacagcttaagctatttgtgctcgtg 26006640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 35852700 - 35852769
Alignment:
Q  345 gctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgacatc 414  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  35852700 gctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaaggctcaaaatattcaacatc 35852769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 35046550 - 35046593
Alignment:
Q  19 atttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||    
T  35046550 atttaaaacttttgaaacttaaaggactaacttgggaattatgt 35046593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 41735875 - 41735829
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaattatgtt 63  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||||    
T  41735875 ctatttgaaacttttgaaacttaaaggactaacttgggaattatgtt 41735829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 42115694 - 42115652
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattat 60  Q
    |||||||||||||| | | ||||||||||||||||||||||||    
T  42115694 tatttaaaacttttgagacttaaaggactaacttgagaattat 42115652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 9034441 - 9034494
Alignment:
Q  347 tcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctca 400  Q
    ||||||||| ||||| |||||| | |||||||||| ||| ||||||||||||||    
T  9034441 tcaagctatctgtgctcgtgcatgatctcttcttattagttggaggaatgctca 9034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 46091400 - 46091087
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| | | |||| ||||||||||||||||||||| ||    
T  46091400 tgtgatgattttggagaggataacactcatttattcttt--gtgtagtaaaagtatgctttgttggcaacgtattggcttatggagccctttgatggttg 46091303  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||  |||||    
T  46091302 tttttgatattaatgtcagctttccaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaaacaacttttcagtgtgaccctttgaagtat 46091203  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  46091202 ttgaaagcatcgaaacaataaggtatggaacaacattactgaaacggctcaagatatttgtgctcgtgcaggttctcttcttactagctggatgaatgct 46091103  T
Q  399 cagaatattcgacatc 414  Q
    || ||||||| |||||    
T  46091102 cataatattcaacatc 46091087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 274 - 414
Target Start/End: Complemental strand, 15303254 - 15303114
Alignment:
Q  274 ttttcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttc 373  Q
    ||||||| |||||||| | |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||  ||| ||| ||    
T  15303254 ttttcagtgtgaccctctggagtatatggaagcatcgaaacaataaagtatggaacaatattactgaaacagctcaagttatttgtgcttgtggaggatc 15303155  T
Q  374 tcttcttactagctggaggaatgctcagaatattcgacatc 414  Q
    |||||||||||| ||||||| |||||||| |||||| ||||    
T  15303154 tcttcttactagttggaggattgctcagactattcgtcatc 15303114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 39302756 - 39302790
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  39302756 aaacttttaaaatttaaaggactaacttgagaatt 39302790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 44964022 - 44964056
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  44964022 aaacttttaaaatttaaaggactaacttgagaatt 44964056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 48352738 - 48352788
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||| ||||||||||||||| ||| |||||||||||||||| |||||||||    
T  48352738 atgacctatttaaaacttttgaaacttaaaggactaacttgggaattatgt 48352788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 10686710 - 10686761
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaattatgtt 63  Q
    |||| |||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  10686710 atgacctatttgaaacttttaaaacttaaatgactaacttgagaattctgtt 10686761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 35701553 - 35701519
Alignment:
Q  28 ttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||||||||||| ||||||||||||||||||||    
T  35701553 ttttaaaatttaaaagactaacttgagaattatgt 35701519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 49650621 - 49650591
Alignment:
Q  32 aaaatttaaaggactaacttgagaattatgt 62  Q
    |||||||||||||||||||||||||||||||    
T  49650621 aaaatttaaaggactaacttgagaattatgt 49650591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 44964075 - 44964116
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||| |||||||||||| |||||||| |||||||||||||    
T  44964075 ctatttgaaacttttaaaacttaaaggaataacttgagaatt 44964116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 8902883 - 8902843
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  8902883 tatttaaaacttttgaaacttaaaggactaacttgggaatt 8902843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 27351165 - 27351129
Alignment:
Q  26 acttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  27351165 acttttgaaacttaaaggactaacttgagaattatgt 27351129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 99 - 414
Target Start/End: Original strand, 32577332 - 32577647
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    ||||||||||| ||||||||||  |  ||||||||||||| |||||||||||||||||||| |||| | | |||| ||||||||||||||||||||||||    
T  32577332 tgtgatgatttcggagaggatagtaaccatttgttctttatgtgtagtaaaagtatgctttattggcaacgtattggcttatggagccctttgatggctg 32577431  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  32577432 tctttgatattaatgtcagttttccaaccaatgtatttgctatcctacaacacctggatcagcagcaaaagcaaattttcagtgtgaccctttggagtat 32577531  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  32577532 ttggaagcatcgaaacaataaggtatggaacaacatcactgatacagctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgct 32577631  T
Q  399 cagaatattcgacatc 414  Q
    ||||||||||| ||||    
T  32577632 cagaatattcggcatc 32577647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 156 - 410
Target Start/End: Original strand, 5839121 - 5839371
Alignment:
Q  156 ctttgttggaagcatatttgcttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctgg 255  Q
    ||||||||| | | |||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  5839121 ctttgttggcaacgtattggcttatggagcactttgatggctctttttgatattaaggtcagctttccaaccaatgtgtttgctatcctacaacacctgg 5839220  T
Q  256 atcagcagcaaaagcaaattttcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctat 355  Q
    ||||    |||||||||| ||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||    
T  5839221 atca----caaaagcaaactttgagtgtgaccctttggagtatttggaagcatcgaaacaatatggtatggaacaacattactgaaacaactcaagttat 5839316  T
Q  356 ttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcga 410  Q
    || | | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  5839317 ttattctcgtgcatgttctcttcttactagctggaggaatgctcagaatattcga 5839371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 99 - 396
Target Start/End: Complemental strand, 32283609 - 32283312
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||  || ||| ||||||||| ||||  |||||| | | |||||||| |||| |   | ||||||||   |||||||||||    
T  32283609 tgtgatgattttggtgaggatagtacccatatgttctttatgtgtgataaaagcaagatttgttggcagcagagcggattatggagtgttttgatggctg 32283510  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||| |||  |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| | ||||||    
T  32283509 tttttgatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctggatcaacagcaaaagcaaattttcagtgtgaccctctggagtat 32283410  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatg 396  Q
     ||||||||||||||||| || ||||| |||||  ||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||| |||||    
T  32283409 atggaagcatcgaaacaacaaagtatgaaacaatgttactgaaacagctcaagccatttgtgctcgtgcaggatctcttcttactagttggaagaatg 32283312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 34686908 - 34686949
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  34686908 ctatttaaaacttttaaaatttaaaggactaacttgataatt 34686949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 25737614 - 25737660
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  25737614 atgaaatatttgaaacttttgaaatttaaaggactaacttgagaatt 25737660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 14871063 - 14871027
Alignment:
Q  15 aactatttaaaacttttaaaatttaaaggactaactt 51  Q
    |||||||| ||||||||||||||||||||||||||||    
T  14871063 aactatttgaaacttttaaaatttaaaggactaactt 14871027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 25730134 - 25730174
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  25730134 tatttgaaacttttgaaatttaaaggactaacttgagaatt 25730174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 8713901 - 8713863
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  8713901 aaacttttgaaacttaaaggactaacttgagaattatgt 8713863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 36360028 - 36359982
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||| |||||| |||||||||||| |||||||||||||||| |||||    
T  36360028 atgacctatttgaaacttttaaaacttaaaggactaacttgggaatt 36359982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 25737166 - 25737121
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  25737166 ctatttgaaacttttgaaacttaaaggactaacttgaaaattatgt 25737121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13771878 - 13771922
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    ||||| |||||||| ||| |||||||||||||||| |||||||||    
T  13771878 tatttgaaacttttgaaacttaaaggactaacttgggaattatgt 13771922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 30576671 - 30576711
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  30576671 tatttaaaacttttgaaacttaaaggactaacttgggaatt 30576711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 31169496 - 31169536
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||| |||||||||||| |||||||||||| |||||||||    
T  31169496 tatttgaaacttttaaaacttaaaggactaatttgagaatt 31169536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 99 - 414
Target Start/End: Original strand, 32956733 - 32957048
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||| | | || | ||||||||||||||||||||||||    
T  32956733 tgtgatgattttggagaggatagcaaccatttgttctttatgtgtagtaaaagtatgctttgttggcaacgtactggcttatggagccctttgatggctg 32956832  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  32956833 tctttgatattaatgtcagctttccaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaactttcagtgtgaccctttggagtat 32956932  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  32956933 ttggaagcatcgaaacaataaggtgtggaacaacatcactgatacagctcaagatatttgtgctcgtgcaggttctcttcttactagctggcggaatgct 32957032  T
Q  399 cagaatattcgacatc 414  Q
    || | |||||||||||    
T  32957033 caaattattcgacatc 32957048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 7436378 - 7436064
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||  || ||| ||||||||| ||||  |||||| | | |||||||| |||| | |   |||| |||   |||| ||||||    
T  7436378 tgtgatgattttggtgaggatagtacccatctgttctttatgtgtgataaaagcaagatttgttggcagcagagtgatttatagagtgttttggtggctg 7436279  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||| |||  |||||| |||||||||||||||||||| |||||||||||||||| || ||||||||| ||||||| |||||||| ||||||||    
T  7436278 tttttgatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctggatcaaca-caaaagcaagttttcagtgtgaccctctagagtat 7436180  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     ||||||||| ||||||| || || ||||||||  |||| |||||||||||||  |||||||| | |||| | ||| |||||||||| ||||||||||||    
T  7436179 atggaagcattgaaacaacaaagtttggaacaatgttaccgaaacagctcaaggcatttgtgctcatgcatgatcttttcttactagttggaggaatgct 7436080  T
Q  399 cagaatattcgacatc 414  Q
    |||  |||||| ||||    
T  7436079 cagtctattcgtcatc 7436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 188 - 414
Target Start/End: Original strand, 7607272 - 7607498
Alignment:
Q  188 tttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgacc 287  Q
    ||||||| |||||||| ||||| | |  |||||| |||||||||| ||||||||| ||||||||| | |||| |||||||| ||| ||||||| ||||||    
T  7607272 tttgatgactgttttttatattgaggcaagctttccaaccaatgtatttgctatcttacaacacccgaatcaacagcaaaaacaagttttcagtgtgacc 7607371  T
Q  288 ctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagct 387  Q
    || | |||||| ||||||||| ||||||| || |||||||||||  ||||||||||| ||||||  |||| ||| |||||| | |||||||||||||| |    
T  7607372 ctctggagtatatggaagcattgaaacaacaaagtatggaacaatgttactgaaacaactcaagtcatttctgctcgtgcatgatctcttcttactagtt 7607471  T
Q  388 ggaggaatgctcagaatattcgacatc 414  Q
    ||||||||||||||  |||||| ||||    
T  7607472 ggaggaatgctcagtctattcgtcatc 7607498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 17180135 - 17180185
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||| |||||| |||||||||||| ||||||||||||||||| ||||||||    
T  17180135 atgatctatttgaaacttttaaaacttaaaggactaacttgaaaattatgt 17180185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 20575540 - 20575500
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttg 52  Q
    |||| |||||| |||||||||||| ||||||||||||||||    
T  20575540 atgacctatttgaaacttttaaaacttaaaggactaacttg 20575500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 9610346 - 9610031
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    ||||||||||| |||||| ||| ||  ||||||||||||| ||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||    
T  9610346 tgtgatgatttcggagagtatagcaaccatttgttctttatgtgtagtaaaagtatgctttgttggcaacgtattggcttatggagccctttgatggctg 9610247  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||    
T  9610246 tctttgatattaatgtcagttttccaaccaatgtgtttgctatcctacaacacctggatcagcaacaaaagcaaatcttcagtgtgaccctttggagtat 9610147  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  9610146 ttggaagcatcgaaacaataaggtatggaacaacatcactgatacagctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgct 9610047  T
Q  399 cagaatattcgacatc 414  Q
    ||||||||||| ||||    
T  9610046 cagaatattcggcatc 9610031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 99 - 413
Target Start/End: Complemental strand, 29242951 - 29242637
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||| | ||||||| |||||||| |||||    
T  29242951 tgtgatgattttggagaggataacactcattttttctttatgtgtagtaaaagtatgctttgttggcaacatattggtttatggaaccctttgacggctg 29242852  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||    
T  29242851 tctttgatattaatgtcaactttccaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaatgttcagtgtgaccctttggattat 29242752  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  29242751 ttggaagcatcgaaacaataaggtatggaacaacatcactgacacagcccaagatatttgtgctcgtgcagggtctcttcttactagctggaggaatgct 29242652  T
Q  399 cagaatattcgacat 413  Q
    || ||||||||||||    
T  29242651 caaaatattcgacat 29242637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 30797642 - 30797327
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    ||||||||||| |||||||||| ||  ||||||||||||| ||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  30797642 tgtgatgatttcggagaggatagcaaccatttgttctttatgtgcagtaaaagtatgctttgttggcaacatattggcttatggagccctttgatggctg 30797543  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    | ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||| ||||||    
T  30797542 tctttgatattaatgtcagttttccaaccaatgtgtttgctatcttacaacacctggatcagcagcaaaagcaaatttttagtgtgactctttggagtat 30797443  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30797442 ttggaagcatcgaaacaataaggtatggaacaacatcactgataccgctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgct 30797343  T
Q  399 cagaatattcgacatc 414  Q
    ||||||||||| ||||    
T  30797342 cagaatattcggcatc 30797327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 177 - 414
Target Start/End: Complemental strand, 27453235 - 27452998
Alignment:
Q  177 ttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattt 276  Q
    |||||||| | |||||||| ||||||||||||| |||  || ||| || ||||||||||||||||| |||||||||| || ||||| ||||||||| |||    
T  27453235 ttatggagtcttttgatggatgtttttgatattgatgcaagttttccatccaatgtgtttgctatcttacaacacctcgaccagcaacaaaagcaagttt 27453136  T
Q  277 tcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctct 376  Q
    |||| |||||||||| |||||| |||||||||||||||||||| |||||| ||||  ||||||||||| ||||| |||||||||| |||||| | |||||    
T  27453135 tcagtgtgaccctttggagtatatggaagcatcgaaacaataaagtatgggacaatgttactgaaacaactcaaactatttgtgctcgtgcaagatctct 27453036  T
Q  377 tcttactagctggaggaatgctcagaatattcgacatc 414  Q
    ||||||||| |||| ||||||||||  |||||| ||||    
T  27453035 tcttactagttggaagaatgctcagtctattcgtcatc 27452998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 18951431 - 18951385
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  18951431 atgacctatttaaaacttttaaaacttaaaggactaacttgagaatt 18951385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 20728650 - 20728605
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgtt 63  Q
    ||||| |||||||||||| |||||||||||||||||||||| ||||    
T  20728650 tatttgaaacttttaaaacttaaaggactaacttgagaattctgtt 20728605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 20729045 - 20729086
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  20729045 ctatttgaaacttttaaaatttaaaggactaacttgaaaatt 20729086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 1722563 - 1722517
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaattatgtt 63  Q
    ||||||||||||||| ||| |||||||||||||||| ||||| ||||    
T  1722563 ctatttaaaacttttgaaaattaaaggactaacttgtgaattttgtt 1722517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 18249081 - 18249035
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaattatgtt 63  Q
    ||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  18249081 ctatttaaaacttttgaaacttaaatgactaacttgagaattctgtt 18249035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 32660327 - 32660281
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||| |||||| |||||||| ||| ||||||||||||||||||||||    
T  32660327 atgacctatttgaaacttttgaaacttaaaggactaacttgagaatt 32660281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 18951366 - 18951325
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||||||||||||| ||| |||||||||||||||| |||||    
T  18951366 ctatttaaaacttttgaaacttaaaggactaacttgggaatt 18951325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 36418401 - 36418446
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  36418401 ctatttgaaacttttgaaacttaaaggactaacttgaaaattatgt 36418446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1722622 - 1722578
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||    
T  1722622 tatttgaaacttttgaaacttaaaggattaacttgagaattatgt 1722578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 6336211 - 6336171
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttg 52  Q
    |||| ||||||||||||||| ||| ||||||||||||||||    
T  6336211 atgacctatttaaaacttttgaaacttaaaggactaacttg 6336171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 30737862 - 30737818
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||||||||||| ||| ||||| |||||| |||||||||||||    
T  30737862 tatttaaaacttttgaaacttaaaagactaatttgagaattatgt 30737818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 35891263 - 35891307
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  35891263 tatttgaaacttttgaaacttaaaggactaacttgaaaattatgt 35891307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 99 - 407
Target Start/End: Original strand, 186420 - 186729
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||  ||||||||| ||  ||||||||||||| ||||||||||||||||||||||||| | | |||| || |||||||||||||||||||||    
T  186420 tgtgatgatttcagagaggatagcaaccatttgttctttatgtgtagtaaaagtatgctttgttggcaacgtattggcatatggagccctttgatggctg 186519  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaa-ttttcagagtgaccctttagagta 297  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||    
T  186520 tttttgatattaatgtcagttttccaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaatttttcagtgtgaccctttggagta 186619  T
Q  298 tttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgc 397  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  186620 tttggaagcatcgaaacaataaggtattgaacaacatcactgatacagctcaagatatttgtgctcgtgcaggttctcttcttactagctggaggaatgc 186719  T
Q  398 tcagaatatt 407  Q
    ||||||||||    
T  186720 tcagaatatt 186729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 3043 - 2728
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||  |||||||||||||||| ||||| ||||||||||||||| ||| | | |||| | ||||||||||||||||||||||    
T  3043 tgtgatgattttggtgaggatagtactcatttgttctttatgtgtaataaaagtatgctttgctggcaacgtattggtttatggagccctttgatggctg 2944  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||| |||||| | ||  |||||||| ||||||||    
T  2943 tttttgatattaatgtcagctttccaaccaatgtgtttacaatcctacaacacctggatcagcaacaaacgcaaatgtccaatgtgaccctctagagtat 2844  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||||    
T  2843 ttggaagcatcgaaacaataaggtatggaacaacattaccgaaacagctcaagctatttgtgctcgtgcaggttatctttttaccagctggaggaatgct 2744  T
Q  399 cagaatattcgacatc 414  Q
    ||||||||||||||||    
T  2743 cagaatattcgacatc 2728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 43019199 - 43018884
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||| || ||||||||||||| ||||| |||||| | | |||||||  | | || | | |||||||| | |||||||||||    
T  43019199 tgtgatgattttggtgaggataatacccatttgttctttatgtgtaataaaagcaagatttgttgacaacgtagtggattatggagtcttttgatggctg 43019100  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||| |  ||  |||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||| | ||||| |||||||||| ||||||    
T  43019099 tttttgatagttctgcaagctttccaaccaatgtgtttgctatcttacaacacctggaccagcaacaaaagcaactattcagtgtgaccctttggagtat 43019000  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||| | |||||||||||||| ||||||||||||    
T  43018999 atggaagcatcgaaacaataaggtatggaacaatgttactgaaacagctcaagatatttgtgctcgtgcaagatctcttcttactagttggaggaatgct 43018900  T
Q  399 cagaatattcgacatc 414  Q
    |||| |||||| ||||    
T  43018899 cagactattcgtcatc 43018884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 51192716 - 51192401
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||| ||||| |||||||  || ||| ||||||||| ||||  |||||| | | ||||||||   || | | | ||||||||   |||||||||||    
T  51192716 tgtgatgactttggtgaggatagtacccatctgttctttatgtgtgataaaagcaagatttgttggttacagagtggattatggagtgttttgatggctg 51192617  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||| |||  |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||| | ||||||    
T  51192616 tttttgatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctggatcaacagcaaaagcaagttttcagtgtgaccctctggagtat 51192517  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     ||||||||||||||||| || |||||||||||  || |||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||    
T  51192516 atggaagcatcgaaacaacaaagtatggaacaatgttgctgaaacagctcaagccatttgtgctcgtgcaggatctcttcttactagttggaggaatgct 51192417  T
Q  399 cagaatattcgacatc 414  Q
    |||  |||||| ||||    
T  51192416 cagtctattcgtcatc 51192401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 177 - 407
Target Start/End: Original strand, 21689113 - 21689343
Alignment:
Q  177 ttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattt 276  Q
    ||||||| || ||| |||| ||||||||||| | |||  || ||| || ||||||||||||||||| || |||||||||| || || ||  ||||| |||    
T  21689113 ttatggaaccttttaatggttgtttttgatactgatgcaagttttccatccaatgtgtttgctatcttataacacctggaccaacaacatcagcaagttt 21689212  T
Q  277 tcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctct 376  Q
    || | ||||| || | |||||| |||||||||| ||| ||||||||||| |||||  || |||||||| |||||||||||||||| |||||| |||||||    
T  21689213 tcggtgtgactctctggagtatatggaagcatcaaaataataaggtatgaaacaatgtttctgaaacaactcaagctatttgtgctcgtgcaagttctct 21689312  T
Q  377 tcttactagctggaggaatgctcagaatatt 407  Q
    ||||||||| |||||||||||||||| ||||    
T  21689313 tcttactagttggaggaatgctcagactatt 21689343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 176 - 414
Target Start/End: Original strand, 13443522 - 13443760
Alignment:
Q  176 cttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaatt 275  Q
    |||||||| |||||| || | ||  ||||||| |||||  ||||||  ||| |||||| || ||||  || |||| ||||||||||| ||||||||| ||    
T  13443522 cttatggaaccctttaatagatgcctttgatactaatgcaagctttctaactaatgtgatttctattttaaaacatctggatcagcaacaaaagcaactt 13443621  T
Q  276 ttcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctc 375  Q
    ||| | ||||| || | |||||| |||||||||||||||||||||||| |||||||  ||||| |||||| ||||||||||||||  |||||||||||||    
T  13443622 ttctgtgtgactctatggagtatatggaagcatcgaaacaataaggtaaggaacaatgttactaaaacagttcaagctatttgtgatcgtgcaggttctc 13443721  T
Q  376 ttcttactagctggaggaatgctcagaatattcgacatc 414  Q
     |||||||| || | |||||||||||| |||||| ||||    
T  13443722 ctcttactaactagtggaatgctcagattattcgtcatc 13443760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 55219267 - 55219174
Alignment:
Q  322 tatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgacatct 415  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55219267 tatggaacaacattactgaaatagctcaagctatttgtgttcgtgcgggttctcttcttactagctggaggaatgctcagaatattcgacatct 55219174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 412
Target Start/End: Original strand, 23483994 - 23484177
Alignment:
Q  228 aatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatgga 327  Q
    ||||||||| |||| ||| |||| ||||| ||||||||||| ||||| ||  | ||||| || | ||||||||||||| || |||| || ||||| || |    
T  23483994 aatgtgttttctattctataacatctggaccagcagcaaaaacaaatctttggtgtgacgctatggagtatttggaagaatagaaataacaaggtttgta 23484093  T
Q  328 acaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgaca 412  Q
    ||||  ||||||||||| ||||| ||||||||| ||||||| |||| |||||  ||||||||| |||||| || | |||||||||    
T  23484094 acaatgttactgaaacatctcaaactatttgtgaacgtgcacgttc-cttctcgctagctggatgaatgcccaaactattcgaca 23484177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 23483868 - 23483937
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagca 169  Q
    ||||| || ||||| || ||||| ||| ||||||| |||| ||||||||||||| ||||||||||||||||    
T  23483868 tgtgaagactttggtgaagataatacttatttgtt-tttatgtgtagtaaaagtgtgctttgttggaagca 23483937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 13441466 - 13441527
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttg 160  Q
    |||||||| ||||| || ||||  |||||| ||||||||| |||||||||||| ||||||||    
T  13441466 tgtgatgaatttggtgaagatagtactcatatgttctttatgtgtagtaaaagcatgctttg 13441527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 38452537 - 38452222
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||  |  ||||||||||||| ||||  |||||| | | |||||||| |||| | | | |||||||| | |||||||||||    
T  38452537 tgtgatgattttggtgaggatagtatccatttgttctttatgtgtgataaaagcaagatttgttggcagcagagtggattatggagtcttttgatggctg 38452438  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||| |||  |||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||    
T  38452437 tttttgatattgatgcaagctttccaaccaatgtgtttggtatcttacaacacctggaccagcagcaaaagcaagttttcagtgtgaccctttggagtat 38452338  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     |||||||| ||||||||||| |||||||||||  ||||||||||| |||||||||||||||| |||||| | |||||||||||||| |||| |||||||    
T  38452337 atggaagcaccgaaacaataaagtatggaacaatgttactgaaacaactcaagctatttgtgctcgtgcaagatctcttcttactagttggaagaatgct 38452238  T
Q  399 cagaatattcgacatc 414  Q
    |||  |||||| ||||    
T  38452237 cagtctattcgtcatc 38452222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 99 - 408
Target Start/End: Original strand, 10213114 - 10213423
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||| ||||| || ||||  |||||||||||||||| |||||||||||| ||||| |||||| |||  ||| |||||||||||||||||||||||     
T  10213114 tgtgatgaatttggtgaagatagtactcatttgttctttatgtgtagtaaaagcatgctatgttggtagcggattggcttatggagccctttgatggcta 10213213  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
      ||||||| |||||  |||||| |||||||||||||||||||  ||||||| |||||||| || ||||| ||| | ||    ||||| || | ||||||    
T  10213214 cctttgatactaatgcaagctttccaaccaatgtgtttgctattttacaacatctggatcaacatcaaaaacaagtatttgatgtgactctatggagtat 10213313  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     ||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||  |||||| |||||||||||| ||||||||||||||||    
T  10213314 atggaagcatcgaaacaataaggtatggaacaatgttactgaaacatctcaagccatttgtgatcgtgcaagttctcttcttagtagctggaggaatgct 10213413  T
Q  399 cagaatattc 408  Q
    |||| |||||    
T  10213414 cagattattc 10213423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 177 - 401
Target Start/End: Complemental strand, 23770541 - 23770317
Alignment:
Q  177 ttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattt 276  Q
    |||||||| | |||||||||||||||||||||| |||  || ||| |||||| ||||||||||||| |||||||| |||| ||||| ||||| ||| |||    
T  23770541 ttatggagtcttttgatggctgtttttgatattgatgcaagttttccaaccactgtgtttgctatcttacaacacttggaccagcaacaaaaacaagttt 23770442  T
Q  277 tcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctct 376  Q
    |||| |||||||| | |||||| ||||||||| |||||||||| |||||||||||  | |||||||||||| ||||||||||||| |||||||| ||| |    
T  23770441 tcagtgtgaccctctggagtatatggaagcatagaaacaataaagtatggaacaatgtcactgaaacagctgaagctatttgtgctcgtgcaggatctgt 23770342  T
Q  377 tcttactagctggaggaatgctcag 401  Q
    ||||||||| |||||||||||||||    
T  23770341 tcttactagttggaggaatgctcag 23770317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 99 - 414
Target Start/End: Complemental strand, 23797554 - 23797243
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||| ||||||||| |||||||  || ||||||||||||| ||||  |||||| | | |||||||| |||| | | | |||||||| | ||||||| |||    
T  23797554 tgtgttgattttggcgaggatagtacccatttgttctttatgtgtgataaaagcaagatttgttggcagcagagtggattatggagtcttttgatgactg 23797455  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    |||| |||||| |||  |||||| |||||||||||||||||||| ||||||||||||| ||||| ||||| ||| ||||||  ||   ||| | ||||||    
T  23797454 ttttagatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctggaccagcaacaaaaacaagttttcaatgt---cctcttgagtat 23797358  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     | | |||||||||||||||| ||||||||| |  | ||||||||| || ||||||||||||| |||||||| || ||||||||||| ||||||||||||    
T  23797357 attgtagcatcgaaacaataaagtatggaac-atgtcactgaaacaactgaagctatttgtgctcgtgcaggatcccttcttactagttggaggaatgct 23797259  T
Q  399 cagaatattcgacatc 414  Q
    |||  |||||| ||||    
T  23797258 cagtctattcgtcatc 23797243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 24478065 - 24477985
Alignment:
Q  334 ttactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgacatc 414  Q
    |||||||||||| ||||| ||||||||| |||||||| ||||||||||| || |||||||||||||||| |||||| ||||    
T  24478065 ttactgaaacagttcaagatatttgtgctcgtgcaggatctcttcttaccagttggaggaatgctcagactattcgtcatc 24477985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 414
Target Start/End: Complemental strand, 23408306 - 23408219
Alignment:
Q  327 aacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgacatc 414  Q
    |||||| ||| ||||||| |||||||||||||||  ||| || |||| |||||||||||||||||||||||||||| |||||| ||||    
T  23408306 aacaacgttaatgaaacaactcaagctatttgtgatcgtacatgttcacttcttactagctggaggaatgctcagattattcgtcatc 23408219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 30907196 - 30907151
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||    
T  30907196 ctatttgaaacttttgaaacttaaaggactaacttgagaattatgt 30907151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 39301889 - 39301919
Alignment:
Q  21 ttaaaacttttaaaatttaaaggactaactt 51  Q
    |||||||||||||||||||||||||||||||    
T  39301889 ttaaaacttttaaaatttaaaggactaactt 39301919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 15506507 - 15506552
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgtt 63  Q
    ||||||||||||||||||||||||  ||||| ||||||||| ||||    
T  15506507 tatttaaaacttttaaaatttaaataactaaattgagaattctgtt 15506552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 27177138 - 27177275
Alignment:
Q  223 caaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtatttggaagcatcgaaacaataaggt 322  Q
    |||| |||||||||| |||  |||||||||| |||| | ||||||| ||| ||||  |  ||||||| |  ||||| ||||||||| | || || |||||    
T  27177138 caacaaatgtgtttgttattttacaacacctagatccgaagcaaaaacaagttttttgtttgaccctatgaagtatctggaagcatagtaataacaaggt 27177237  T
Q  323 atggaacaacattactgaaacagctcaagctatttgtg 360  Q
     ||||||||||| |||||| || || || |||||||||    
T  27177238 ttggaacaacatcactgaatcatcttaaactatttgtg 27177275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 31264047 - 31264006
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||| |||||||| ||| ||||||||||||||||||||||    
T  31264047 ctatttgaaacttttgaaacttaaaggactaacttgagaatt 31264006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 34336157 - 34336116
Alignment:
Q  17 ctatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||||||||||||| ||| |||||||||||||||| |||||    
T  34336157 ctatttaaaacttttgaaacttaaaggactaacttgggaatt 34336116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 11871753 - 11871793
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||||||||||||| ||| |||||||||||||| |||||||    
T  11871753 tatttaaaacttttgaaacttaaaggactaactcgagaatt 11871793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 30907316 - 30907356
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    ||||| |||||||| ||| ||||||||||||||||||||||    
T  30907316 tatttgaaacttttgaaacttaaaggactaacttgagaatt 30907356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 99 - 401
Target Start/End: Complemental strand, 27781 - 27480
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||  || ||||||||||||| ||||  |||||| | | ||| |||| |||| | | | |||||||| | |||||||||||    
T  27781 tgtgatgattttggcgaggatagtacccatttgttcttta-gtgtgataaaagcaagatttattggcagcagagtggattatggagtcttttgatggctg 27683  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||||||||| |||  |||||| || ||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||||| |||||||| ||||||||    
T  27682 tttttgatattgatgcaagctttccagccaatgtgtttgctatcttacaacacttggaccagcaacaaaagcaagttttcagtgtgaccctctagagtat 27583  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     ||||||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  27582 atggaagcattgaaacaataaagtatggaacaatgttactgaaacagctcaagctatttgtgctcgtgcaggatctcttcttactagttggaggaatgct 27483  T
Q  399 cag 401  Q
    |||    
T  27482 cag 27480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 99 - 400
Target Start/End: Original strand, 57694 - 57995
Alignment:
Q  99 tgtgatgattttggagaggataacactcatttgttctttacgtgtagtaaaagtatgctttgttggaagcatatttgcttatggagccctttgatggctg 198  Q
    |||||||||||||| |||||||  |  ||||||||||||| ||||  |||||| | |  ||||||||||   | | | |||||||| | |||||||| ||    
T  57694 tgtgatgattttggtgaggatagtagccatttgttctttatgtgtgataaaagcaagaattgttggaagtggagtggattatggagtcttttgatggttg 57793  T
Q  199 tttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtat 298  Q
    ||||| ||||| |||  ||||||  ||||||||||||||||||| ||||| ||||||| ||||||||||| ||| ||||||| |||||||||| ||||||    
T  57794 ttttttatattgatgcaagctttctaaccaatgtgtttgctatcttacaatacctggaccagcagcaaaaacaagttttcagtgtgaccctttggagtat 57893  T
Q  299 ttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgct 398  Q
     |||||||||||||||||||| |||||||||||  ||||| |||||||||||||||||||||| ||||||   |||||||||||||| || |||||||||    
T  57894 atggaagcatcgaaacaataaagtatggaacaatgttactaaaacagctcaagctatttgtgctcgtgcataatctcttcttactagttgaaggaatgct 57993  T
Q  399 ca 400  Q
    ||    
T  57994 ca 57995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 177 - 401
Target Start/End: Original strand, 215838 - 216062
Alignment:
Q  177 ttatggagccctttgatggctgtttttgatattaatgtcagcttttcaaccaatgtgtttgctatcctacaacacctggatcagcagcaaaagcaaattt 276  Q
    |||||||| | ||||||| ||||||||||| || |||  |||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||| |||    
T  215838 ttatggagtcttttgatgactgtttttgattttgatgcaagctttccaaccaatgtgtttgctaccttacaacacctggaccagcagcaaaagcaagttt 215937  T
Q  277 tcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaacattactgaaacagctcaagctatttgtgcacgtgcaggttctct 376  Q
    |||| |||| |||||||||||  |||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||| | || ||| | |||||    
T  215938 tcagtgtgatcctttagagtaaatggaagcatcgaaacaataaagtatggaacaatattactgaaatagctcaaactatttgttctcgggcatgatctct 216037  T
Q  377 tcttactagctggaggaatgctcag 401  Q
    ||||||||| |||||||||||||||    
T  216038 tcttactagttggaggaatgctcag 216062  T

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Target: scaffold0201 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 232 - 412
Target Start/End: Original strand, 20084 - 20263
Alignment:
Q  232 tgtttgctatcctacaacacctggatcagcagcaaaagcaaattttcagagtgaccctttagagtatttggaagcatcgaaacaataaggtatggaacaa 331  Q
    |||||||||| |||||||| ||||||||||||||||| ||||| || || ||||| || ||||||||||||||| || |||| || ||||| || |||||    
T  20084 tgtttgctattctacaacatctggatcagcagcaaaaacaaatctttagtgtgacgctatagagtatttggaagaatagaaataacaaggtttgtaacaa 20183  T
Q  332 cattactgaaacagctcaagctatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgaca 412  Q
      ||||||||||| ||||| ||||||||| ||||||| |||| |||||  ||||||||| |||||| || | |||||||||    
T  20184 tgttactgaaacatctcaaactatttgtgaacgtgcacgttc-cttctcgctagctggatgaatgcccaaactattcgaca 20263  T

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Target: scaffold1351 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 1990 - 1929
Alignment:
Q  353 tatttgtgcacgtgcaggttctcttcttactagctggaggaatgctcagaatattcgacatc 414  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1990 tatttgtgctcgtgcaggttctcttcttactagctggaggaatgctcagaatattcggcatc 1929  T

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Target: scaffold0746 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 531 - 577
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||    
T  531 atgacctatttgaaacttttgaaatttaaaggactaacttgagaatt 577  T

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Target: scaffold0746; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 83 - 39
Alignment:
Q  18 tatttaaaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||||||||||| ||| || |||||||||||||||||||||||    
T  83 tatttaaaacttttgaaacttgaaggactaacttgagaattatgt 39  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 28672 - 28626
Alignment:
Q  12 atgaactatttaaaacttttaaaatttaaaggactaacttgagaatt 58  Q
    |||| |||||| |||||||| || |||||||||||||||||||||||    
T  28672 atgacctatttgaaacttttgaattttaaaggactaacttgagaatt 28626  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 45271 - 45309
Alignment:
Q  24 aaacttttaaaatttaaaggactaacttgagaattatgt 62  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  45271 aaacttttaaaacttaaaagactaacttgagaattatgt 45309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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