View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17986_low_4 (Length: 414)

Name: NF17986_low_4
Description: NF17986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17986_low_4
NF17986_low_4
[»] chr1 (6 HSPs)
chr1 (20-375)||(32555384-32555736)
chr1 (127-208)||(16922740-16922821)
chr1 (349-381)||(21516260-21516292)
chr1 (348-399)||(24153163-24153214)
chr1 (349-393)||(37236-37280)
chr1 (349-385)||(15514937-15514973)
[»] scaffold0072 (1 HSPs)
scaffold0072 (354-399)||(4864-4909)
[»] chr8 (5 HSPs)
chr8 (353-402)||(26284927-26284976)
chr8 (348-399)||(34563136-34563187)
chr8 (349-399)||(43907932-43907982)
chr8 (349-398)||(31296009-31296058)
chr8 (349-393)||(7008516-7008560)
[»] chr3 (1 HSPs)
chr3 (349-398)||(48933718-48933767)
[»] chr7 (4 HSPs)
chr7 (349-380)||(22388576-22388607)
chr7 (349-381)||(2380230-2380262)
chr7 (350-382)||(3501115-3501147)
chr7 (349-381)||(22388055-22388087)
[»] chr6 (2 HSPs)
chr6 (349-399)||(9833230-9833280)
chr6 (351-399)||(10452493-10452541)
[»] chr5 (6 HSPs)
chr5 (349-383)||(14959618-14959652)
chr5 (349-399)||(26516185-26516235)
chr5 (349-399)||(36542414-36542464)
chr5 (350-399)||(6734025-6734074)
chr5 (342-383)||(11911794-11911835)
chr5 (350-399)||(40205205-40205254)
[»] chr2 (1 HSPs)
chr2 (349-399)||(32634231-32634281)
[»] chr4 (4 HSPs)
chr4 (349-398)||(41162187-41162236)
chr4 (349-381)||(5624771-5624803)
chr4 (349-381)||(29563547-29563579)
chr4 (349-397)||(43845283-43845331)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 32555384 - 32555736
Alignment:
Q  20 cttataatgttacatataaatttgcaagctataattacttgcatatcaagccacttctcttcttactgcatattttgaagttcatctaatgatgatgcaa 119  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  32555384 cttatcatgttacatataaatttgcaagctataattacttgcatatcaagccacttctctt---actgcatattttgaagttcatctaatgatgatgcaa 32555480  T
Q  120 ccaaatatgcagtatgcatgccgcaaaactctggctgatagcagacctcgagttagaggaagatttgcaaagaatgatgattttggagatacgaatagaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32555481 ccaaatatgcagtatgcatgccgcaaaactctggctgatagcagacctcgagttagaggaagatttgcaaagaatgatgattttggagatacaaatagaa 32555580  T
Q  220 ctgctagtggcaatcatgaagaagaagatgaagaagaggtataagattaatctcaaacaacattcaattattaaacacataccaacacactttacaagtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32555581 ctgctagtggcaatcatgaagaagaagatgaagaagaggtataagattaatctcaaacaacattcaattattaaacacataccaaaacactttacaagtt 32555680  T
Q  320 catatttaacttggctaatgcactattcagataaacaacttaattaaacgcttata 375  Q
    ||||||||||||||||||||| || ||  |||||||||||||||||| | ||||||    
T  32555681 catatttaacttggctaatgcgctgtttggataaacaacttaattaagcacttata 32555736  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 16922740 - 16922821
Alignment:
Q  127 tgcagtatgcatgccgcaaaactctggctgatagcagacctcgagttagaggaagatttgcaaagaatgatgattttggaga 208  Q
    |||||||||| || || |||||| | || |||||| | || |||||||||||||| ||||||||||||||||||||||||||    
T  16922740 tgcagtatgcttgtcgaaaaactttagcggatagccggccgcgagttagaggaaggtttgcaaagaatgatgattttggaga 16922821  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 21516260 - 21516292
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataa 381  Q
    |||||||||||||||||||||||||||||||||    
T  21516260 gataaacaacttaattaaacgcttataacataa 21516292  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 24153163 - 24153214
Alignment:
Q  348 agataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    ||||||||||||||||||||| |||||||||||  ||| |||||||| ||||    
T  24153163 agataaacaacttaattaaacacttataacatatatgtttatcatatgagtg 24153214  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 37236 - 37280
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcata 393  Q
    |||||||| |||||||||| ||||||||||||| ||| |||||||    
T  37236 gataaacagcttaattaaatgcttataacataaatgtttatcata 37280  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 15514937 - 15514973
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgt 385  Q
    |||||||||||||||||| |||||||| |||||||||    
T  15514937 gataaacaacttaattaagcgcttataccataagtgt 15514973  T

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Target: scaffold0072 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 4864 - 4909
Alignment:
Q  354 acaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||    
T  4864 acaacttaattaagcgcttatagcataaatgtctatcatataagtg 4909  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 26284976 - 26284927
Alignment:
Q  353 aacaacttaattaaacgcttataacataagtgtctatcatataagtgatg 402  Q
    |||||||||||||  |||||||| ||||||||| ||||||||||||||||    
T  26284976 aacaacttaattagccgcttatagcataagtgtttatcatataagtgatg 26284927  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 34563136 - 34563187
Alignment:
Q  348 agataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    |||||||||||||||||||||||||||| |||||   | |||||||||||||    
T  34563136 agataaacaacttaattaaacgcttatagcataaacatttatcatataagtg 34563187  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 43907982 - 43907932
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    |||||||| ||||||||||| |||||| ||||| ||| |||||||||||||    
T  43907982 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtg 43907932  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 31296009 - 31296058
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagt 398  Q
    ||||||||||||||||||||| |||||  |||||||| |||||| |||||    
T  31296009 gataaacaacttaattaaacgattatagtataagtgtttatcatgtaagt 31296058  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 7008516 - 7008560
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcata 393  Q
    |||||||||||||||||| |||||||| |||||| || |||||||    
T  7008516 gataaacaacttaattaagcgcttatagcataagcgtttatcata 7008560  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 48933767 - 48933718
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagt 398  Q
    ||||||||  |||||||| | |||||||||||||||||||||||||||||    
T  48933767 gataaacagattaattaagcacttataacataagtgtctatcatataagt 48933718  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 380
Target Start/End: Complemental strand, 22388607 - 22388576
Alignment:
Q  349 gataaacaacttaattaaacgcttataacata 380  Q
    ||||||||||||||||||||||||||||||||    
T  22388607 gataaacaacttaattaaacgcttataacata 22388576  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 2380230 - 2380262
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataa 381  Q
    |||||||||||||||||| ||||||||||||||    
T  2380230 gataaacaacttaattaagcgcttataacataa 2380262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 3501147 - 3501115
Alignment:
Q  350 ataaacaacttaattaaacgcttataacataag 382  Q
    ||||||||||||||||||| |||||||||||||    
T  3501147 ataaacaacttaattaaacacttataacataag 3501115  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 22388087 - 22388055
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataa 381  Q
    |||||||||||||||||| ||||||||||||||    
T  22388087 gataaacaacttaattaagcgcttataacataa 22388055  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 9833280 - 9833230
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    ||||||||||||||||||  | |||||||||||| || |||||||||||||    
T  9833280 gataaacaacttaattaagtgtttataacataagcgtttatcatataagtg 9833230  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 10452541 - 10452493
Alignment:
Q  351 taaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    |||||||||||||||| | |||||| |||||||| ||||||||| ||||    
T  10452541 taaacaacttaattaagctcttatagcataagtggctatcatatcagtg 10452493  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 14959618 - 14959652
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagt 383  Q
    |||||||||||||||||||| ||||||||||||||    
T  14959618 gataaacaacttaattaaacacttataacataagt 14959652  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 26516185 - 26516235
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    |||||||||||||||||| |||||||| |||||| |  |||||||||||||    
T  26516185 gataaacaacttaattaagcgcttatagcataagcgcttatcatataagtg 26516235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 36542464 - 36542414
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    |||||| |||||| ||||||| ||||||||||||| | |||||||||||||    
T  36542464 gataaaaaacttatttaaacgtttataacataagtatttatcatataagtg 36542414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 6734074 - 6734025
Alignment:
Q  350 ataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    ||||||||||||||||| ||||| ||| |||||||  |||||||||||||    
T  6734074 ataaacaacttaattaagcgcttctaatataagtgattatcatataagtg 6734025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 11911794 - 11911835
Alignment:
Q  342 ctattcagataaacaacttaattaaacgcttataacataagt 383  Q
    |||||| ||||||||||||||||||||||| ||| |||||||    
T  11911794 ctattcggataaacaacttaattaaacgctaatagcataagt 11911835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 40205254 - 40205205
Alignment:
Q  350 ataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    |||||||||||| ||| | ||||||||||||||||| ||| |||||||||    
T  40205254 ataaacaacttatttacatgcttataacataagtgtttattatataagtg 40205205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 32634231 - 32634281
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagtg 399  Q
    |||||||||||||||| |||||||||| |||||| || ||||| |||||||    
T  32634231 gataaacaacttaatttaacgcttataccataagggtttatcacataagtg 32634281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 41162236 - 41162187
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataagt 398  Q
    |||||||||||||||||| | ||||||||||||| || |||||| |||||    
T  41162236 gataaacaacttaattaagcacttataacataagcgtttatcatttaagt 41162187  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 5624771 - 5624803
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataa 381  Q
    ||||||||||||||||| |||||||||||||||    
T  5624771 gataaacaacttaattatacgcttataacataa 5624803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 29563579 - 29563547
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataa 381  Q
    ||||||||||||||||||||||||||| |||||    
T  29563579 gataaacaacttaattaaacgcttatagcataa 29563547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 43845331 - 43845283
Alignment:
Q  349 gataaacaacttaattaaacgcttataacataagtgtctatcatataag 397  Q
    ||||| ||| |||||||| ||||||||||||||| |||||| |||||||    
T  43845331 gataagcaatttaattaagcgcttataacataagcgtctattatataag 43845283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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