View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17986_low_5 (Length: 364)
Name: NF17986_low_5
Description: NF17986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17986_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 25306547 - 25306888
Alignment:
| Q |
1 |
tgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaagtaaaagatgagaatttg |
100 |
Q |
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| T |
25306547 |
tgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacaccgtgaagtaaaagatgagaatttg |
25306646 |
T |
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| Q |
101 |
catctatcaattatcttgataaaaggaaaatccaaggnnnnnnnnncatgttggagtggttagtgtcttgaagagtggttcaataaaagttataaaacct |
200 |
Q |
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| T |
25306647 |
catctataaattatcttgataaaaggaaaatccaaggaaaaaaaa-catgttggagtggttagtgtcttgaagagtggttcaataaaagttataaaacct |
25306745 |
T |
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| Q |
201 |
gccagagagtaatgagaaatgaaccattgnnnnnnnccactgttaagattgattttcatcaaggagcctaagtatgtttatagattttcacttatccttg |
300 |
Q |
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| T |
25306746 |
gccagag--taatgagaaatgaaccattgaaaaaaaccactgttaagattgattttcattaaggagcctaagtatgtttatagattttcacttattcttg |
25306843 |
T |
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| Q |
301 |
aaaaaatatatataaaataacttacttgaatgttgggctgtttag |
345 |
Q |
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|||||| | ||| || ||||||||||||||||||||| ||||||| |
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| T |
25306844 |
aaaaaaaaaataaaacataacttacttgaatgttgggttgtttag |
25306888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 25277867 - 25277996
Alignment:
| Q |
1 |
tgttgtgatgtggataatagatttgttaacaaaatatagtacccgtagagaacatattgatgctacatgtgaacatcgtgaagt-aaaagatgagaattt |
99 |
Q |
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| T |
25277867 |
tgttgtgatgtggattatagattttttaacaaaatatagtacccgtagagaacatatggatgctaaatgtgaacaacgtgaagtaaaaagatgagaattt |
25277966 |
T |
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| Q |
100 |
gcatc--tatcaattatcttgataaaagga |
127 |
Q |
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| T |
25277967 |
gcatctatataaattatcttgataaaagga |
25277996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 25278084 - 25278200
Alignment:
| Q |
147 |
catgttggagtggttagtgtcttgaagagtggttcaataaaagttataaaacctgccagagagtaatgagaaatgaaccattgnnnnnnnccactgttaa |
246 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||| |||| |||| |||| |
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| T |
25278084 |
catgttggaggggttagtgtcttgaagaggggttcaataaaagttataaaacctttc--agagtgatgagaaaggaactattgaaaaaaagcactcttaa |
25278181 |
T |
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| Q |
247 |
gattgattttcatcaagga |
265 |
Q |
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| T |
25278182 |
gattgattttcattaagga |
25278200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 25278746 - 25278813
Alignment:
| Q |
275 |
tgtttatagattttcacttatccttgaaaaaatatatataaaataacttacttgaatgttgggctgtttag |
345 |
Q |
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|||||||||||||| |||||| ||||||||| |||| || ||||||||||||||||||||||| ||||| |
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| T |
25278746 |
tgtttatagattttgacttattcttgaaaaa---tataaaacataacttacttgaatgttgggctttttag |
25278813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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