View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17986_low_8 (Length: 283)

Name: NF17986_low_8
Description: NF17986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17986_low_8
NF17986_low_8
[»] chr8 (18 HSPs)
chr8 (69-266)||(2562350-2562547)
chr8 (69-266)||(2553594-2553791)
chr8 (117-230)||(1827799-1827912)
chr8 (117-230)||(1862244-1862357)
chr8 (2-67)||(10203663-10203728)
chr8 (2-68)||(31318803-31318869)
chr8 (111-230)||(2531202-2531321)
chr8 (111-201)||(2540567-2540657)
chr8 (111-233)||(2548975-2549094)
chr8 (2-66)||(30432339-30432403)
chr8 (2-66)||(36189216-36189280)
chr8 (2-66)||(42162598-42162662)
chr8 (4-71)||(43186022-43186089)
chr8 (6-65)||(44081781-44081840)
chr8 (1-63)||(12665347-12665409)
chr8 (1-60)||(33726017-33726076)
chr8 (2-63)||(18184556-18184617)
chr8 (1-61)||(3690728-3690788)
[»] chr4 (11 HSPs)
chr4 (1-66)||(49243815-49243880)
chr4 (2-66)||(3672274-3672338)
chr4 (2-67)||(28093223-28093288)
chr4 (1-67)||(46192358-46192424)
chr4 (2-67)||(21391082-21391147)
chr4 (1-66)||(45829383-45829448)
chr4 (2-68)||(6112628-6112694)
chr4 (2-67)||(7217764-7217829)
chr4 (4-67)||(35544911-35544974)
chr4 (2-67)||(44275705-44275770)
chr4 (1-61)||(51038768-51038828)
[»] chr6 (4 HSPs)
chr6 (2-74)||(3987032-3987104)
chr6 (2-67)||(3118174-3118239)
chr6 (1-66)||(14022934-14022999)
chr6 (21-67)||(15345803-15345849)
[»] chr5 (13 HSPs)
chr5 (1-68)||(17225317-17225382)
chr5 (2-67)||(40888069-40888134)
chr5 (2-69)||(13347125-13347192)
chr5 (2-66)||(33404563-33404627)
chr5 (2-66)||(39370927-39370991)
chr5 (1-67)||(4300669-4300735)
chr5 (2-67)||(1815743-1815808)
chr5 (1-66)||(19596193-19596258)
chr5 (2-67)||(27553500-27553565)
chr5 (2-72)||(9408166-9408236)
chr5 (2-66)||(2237276-2237340)
chr5 (4-55)||(14831555-14831606)
chr5 (1-57)||(41003975-41004031)
[»] chr7 (17 HSPs)
chr7 (2-75)||(42221090-42221163)
chr7 (2-66)||(45782787-45782851)
chr7 (2-68)||(26972330-26972396)
chr7 (2-70)||(7700604-7700672)
chr7 (1-66)||(34108426-34108491)
chr7 (2-63)||(34828069-34828129)
chr7 (2-66)||(7700010-7700074)
chr7 (2-66)||(7700208-7700272)
chr7 (2-66)||(7700406-7700470)
chr7 (2-60)||(31148296-31148354)
chr7 (1-66)||(5811289-5811354)
chr7 (1-66)||(13108148-13108213)
chr7 (2-67)||(36346691-36346756)
chr7 (2-66)||(28307622-28307686)
chr7 (2-66)||(30887700-30887764)
chr7 (1-60)||(23980137-23980196)
chr7 (4-62)||(21807451-21807509)
[»] chr3 (16 HSPs)
chr3 (1-66)||(38231293-38231358)
chr3 (2-66)||(22894680-22894744)
chr3 (1-66)||(29460660-29460725)
chr3 (1-66)||(29471512-29471577)
chr3 (2-66)||(34750025-34750089)
chr3 (2-69)||(43999986-44000053)
chr3 (1-67)||(36370464-36370530)
chr3 (1-58)||(20856277-20856334)
chr3 (2-67)||(21559560-21559625)
chr3 (1-67)||(46112070-46112136)
chr3 (13-67)||(51339919-51339973)
chr3 (2-67)||(30735622-30735687)
chr3 (2-67)||(36749405-36749470)
chr3 (1-70)||(39072399-39072468)
chr3 (2-67)||(50966130-50966194)
chr3 (2-67)||(51069265-51069329)
[»] chr2 (9 HSPs)
chr2 (1-66)||(33732569-33732634)
chr2 (1-66)||(36315561-36315626)
chr2 (1-67)||(37914362-37914428)
chr2 (1-63)||(44958116-44958178)
chr2 (2-67)||(14572994-14573059)
chr2 (2-67)||(16089821-16089886)
chr2 (1-66)||(6376359-6376424)
chr2 (1-68)||(37498991-37499058)
chr2 (13-67)||(3831033-3831087)
[»] chr1 (7 HSPs)
chr1 (2-66)||(34307265-34307329)
chr1 (2-62)||(2509028-2509088)
chr1 (2-69)||(39249990-39250057)
chr1 (1-62)||(29099821-29099881)
chr1 (2-75)||(46901862-46901934)
chr1 (4-66)||(28647353-28647415)
chr1 (1-61)||(10146971-10147031)
[»] scaffold0062 (1 HSPs)
scaffold0062 (2-62)||(6722-6782)
[»] scaffold0043 (1 HSPs)
scaffold0043 (2-62)||(87291-87350)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 69 - 266
Target Start/End: Complemental strand, 2562547 - 2562350
Alignment:
Q  69 taaataagatctgaaagtgtacctcgatgagaactctagctttgcaaggaccactaaaatttgctttcgacaccatgtatgtttttccagctggtataat 168  Q
    |||||||||||||| | | |||||  ||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  2562547 taaataagatctgagactctacctgaatgagaactctggcgctgcaaggaccactaaaatttgctttcgacaccatgtatttttttccagctggtattat 2562448  T
Q  169 tagtgttgacatccctgctgctttacacgcactgctaaatgcactaccaaatgcctaaaattcaattagaatagtcataatctaccaaagccataagt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2562447 tagtgttgacatccctgctgctttacacgcactgctaaatgcactaacaaatgcctacaattcaattagaatagtcataatctaccaaagccataagt 2562350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 69 - 266
Target Start/End: Complemental strand, 2553791 - 2553594
Alignment:
Q  69 taaataagatctgaaagtgtacctcgatgagaactctagctttgcaaggaccactaaaatttgctttcgacaccatgtatgtttttccagctggtataat 168  Q
    |||||||||||||| | | |||||  ||||||||||| ||  ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  2553791 taaataagatctgagactctacctgaatgagaactctggcgctgcaacgaccactaaaatttgctttcgacaccatgtatttttttccagctggtattat 2553692  T
Q  169 tagtgttgacatccctgctgctttacacgcactgctaaatgcactaccaaatgcctaaaattcaattagaatagtcataatctaccaaagccataagt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2553691 tagtgttgacatccctgctgctttacacgcactgctaaatgcactaacaaatgcctacaattcaattagaatagtcataatctaccaaagccataagt 2553594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 1827912 - 1827799
Alignment:
Q  117 gaccactaaaatttgctttcgacaccatgtatgtttttccagctggtataattagtgttgacatccctgctgctttacacgcactgctaaatgcactacc 216  Q
    |||| |||||| || |||||||||||||  |||||||||| || ||||||| ||||||||||||||| | |||||||||||||||| |||||||| ||      
T  1827912 gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatcccagttgctttacacgcactgttaaatgcattaat 1827813  T
Q  217 aaatgcctaaaatt 230  Q
    ||||||||| ||||    
T  1827812 aaatgcctacaatt 1827799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 1862357 - 1862244
Alignment:
Q  117 gaccactaaaatttgctttcgacaccatgtatgtttttccagctggtataattagtgttgacatccctgctgctttacacgcactgctaaatgcactacc 216  Q
    |||| |||||| || |||||||||||||  |||||||||| || ||||||| ||||||||||||||| | |||||||||||||||| |||||||| ||      
T  1862357 gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatcccagttgctttacacgcactgttaaatgcattaat 1862258  T
Q  217 aaatgcctaaaatt 230  Q
    ||||||||| ||||    
T  1862257 aaatgcctacaatt 1862244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 10203728 - 10203663
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||    
T  10203728 tgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 31318869 - 31318803
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctcta 68  Q
    ||||||||||||||||||||||||||   | |||||||||||| |||||||||||||||||||||||    
T  31318869 tgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctcta 31318803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 2531321 - 2531202
Alignment:
Q  111 tgcaaggaccactaaaatttgctttcgacaccatgtatgtttttccagctggtataattagtgttgacatccctgctgctttacacgcactgctaaatgc 210  Q
    |||||||||| |||||| ||  ||||||||||||  ||||||||||  | ||||| |  |||||||||||| ||||||||||||||||||| ||  ||||    
T  2531321 tgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctacgggtatgaccagtgttgacatctctgctgctttacacgcactactccatgc 2531222  T
Q  211 actaccaaatgcctaaaatt 230  Q
    |||  |||||||||| ||||    
T  2531221 actgacaaatgcctacaatt 2531202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 2540657 - 2540567
Alignment:
Q  111 tgcaaggaccactaaaatttgctttcgacaccatgtatgtttttccagctggtataattagtgttgacatccctgctgctttacacgcact 201  Q
    ||||||||||  ||||| ||  ||||||||||||  ||||||||||  |||||||||  |||||||||||| |||||||||||||||||||    
T  2540657 tgcaaggaccgttaaaacttagtttcgacaccataaatgtttttcctactggtataaccagtgttgacatctctgctgctttacacgcact 2540567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 2549094 - 2548975
Alignment:
Q  111 tgcaaggaccactaaaatttgctttcgacaccatgtatgtttttccagctggtataattagtgttgacatccctgctgctttacacgcactgctaaatgc 210  Q
    |||||||||||||||||| |  ||||||| ||||| || ||||   | ||||||||| |||||||||| ||||| |||||||||| ||||| ||  ||||    
T  2549094 tgcaaggaccactaaaatgtattttcgacgccatgaatatttt---acctggtataactagtgttgacgtccctactgctttacaagcactactccatgc 2548998  T
Q  211 actaccaaatgcctaaaattcaa 233  Q
    ||||  ||||||||| |||||||    
T  2548997 actaaaaaatgcctacaattcaa 2548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 30432403 - 30432339
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| | ||||||  ||||||||| |||| |||||||||||||||||||||    
T  30432403 tgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 36189280 - 36189216
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||| ||||| ||||||||  ||||||||||||||  ||||||||||||||||||||    
T  36189280 tgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 42162662 - 42162598
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||| ||| ||||||||  |||||| ||||||| |||||||||||||||||||||    
T  42162662 tgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 43186089 - 43186022
Alignment:
Q  4 tcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctataa 71  Q
    |||||||||||||  | ||||||||| | ||||||||||||||||||| |||||||||| ||||||||    
T  43186089 tcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataagaactctataa 43186022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 44081840 - 44081781
Alignment:
Q  6 acaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagct 65  Q
    |||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||||||    
T  44081840 acaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12665409 - 12665347
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagag 63  Q
    |||| |||||||||||||  ||||||||  |||||||||||||| ||||||||||||||||||    
T  12665409 atgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33726076 - 33726017
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataa 60  Q
    ||||||||||||| ||||| |||||||   ||||||||||||||||||||| ||||||||    
T  33726076 atgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 18184617 - 18184556
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagag 63  Q
    |||||||||| ||||||||||||||||  |||||| ||| ||| ||||||||| ||||||||    
T  18184617 tgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3690728 - 3690788
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 61  Q
    ||||||||| ||||||||||| | |||| ||||||| |||||||  || ||||||||||||    
T  3690728 atgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 49243880 - 49243815
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  49243880 atgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 3672338 - 3672274
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  3672338 tgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 28093223 - 28093288
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||    
T  28093223 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46192424 - 46192358
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| ||| ||||||||||||||||||    
T  46192424 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 21391082 - 21391147
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||| ||||||||  ||||||||| |||| ||||||||||||||||||||||    
T  21391082 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45829383 - 45829448
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| |||||||   |||||| |||||||||||||||||||||||||||||    
T  45829383 atgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 6112694 - 6112628
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctcta 68  Q
    |||||||||| ||||||| |||||||   ||||||||| |||| |||||||||||||||||||||||    
T  6112694 tgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctcta 6112628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 7217829 - 7217764
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||| | ||| ||||  |||||||||||||| |||||| |||||||||||||||    
T  7217829 tgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 35544974 - 35544911
Alignment:
Q  4 tcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||| |||||||||||||   ||||| ||||||||  |||||||||||||||||||||    
T  35544974 tcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 44275770 - 44275705
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||  |||||||   | |||||||||||| |||||| |||||||||||||||    
T  44275770 tgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 51038828 - 51038768
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 61  Q
    ||||||||| ||||||||| ||| ||||  |||||||||||||| ||||| ||| ||||||    
T  51038828 atgtcacaattgtgtgtgggtgtcaaagtttgtatgccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 3987032 - 3987104
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctataaata 74  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||| ||||||    
T  3987032 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctttaaata 3987104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 3118174 - 3118239
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||  ||||||||  |||||||||||||| ||||||||| ||||||||||||    
T  3118174 tgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14022999 - 14022934
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| |||||| |||||||| |||||    
T  14022999 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 15345803 - 15345849
Alignment:
Q  21 tgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||||| | |||||||||||| |||||| |||||||||||||||    
T  15345803 tgtaaaagagtatatgccacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17225382 - 17225317
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctcta 68  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||    
T  17225382 atgtcacaaatgtgtgtgggtgtaaaaga--gtatgccacctaaagtggttcatgtataagagctcta 17225317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 40888069 - 40888134
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||| |||||||||||||||    
T  40888069 tgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 13347192 - 13347125
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctat 69  Q
    |||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||| ||||||||    
T  13347192 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctctat 13347125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 33404563 - 33404627
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| ||||||||  |||||| ||||||| |||||||||||||||||||||    
T  33404563 tgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 39370991 - 39370927
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| ||||||||  ||||||||| |||| |||||||||||||||||||||    
T  39370991 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4300669 - 4300735
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||||||| ||||||| |||||||| || |||| |||||||| |||||||||||||||||||||    
T  4300669 atgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 1815743 - 1815808
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||| ||||||||||||||||  |||||| |||||||  |||||||||||||||||||||    
T  1815743 tgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19596193 - 19596258
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||| ||||||||||||   |||||||||||||| ||||||||||||||| |||||    
T  19596193 atgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 27553500 - 27553565
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||| |||||||   | ||||||||||||| |||||||||||||||||||||    
T  27553500 tgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 9408166 - 9408236
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctataaa 72  Q
    |||||||||||||||||  ||||||||   ||||| ||||| | |||||||||||||||||||||||||||    
T  9408166 tgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctctataaa 9408236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 2237340 - 2237276
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||| ||||||| ||||||||  |||||| ||||||| ||||||||||||||| |||||    
T  2237340 tgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 14831606 - 14831555
Alignment:
Q  4 tcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatg 55  Q
    |||||||||||||||| ||||||||  |||||||||||||| ||||||||||    
T  14831606 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41003975 - 41004031
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgta 57  Q
    |||||| |||||||| ||  ||||||||  |||||||||||||||||||||||||||    
T  41003975 atgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 42221090 - 42221163
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctataaataa 75  Q
    |||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||| | ||||||    
T  42221090 tgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctcaaaaaataa 42221163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 45782787 - 45782851
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| |||||||  |||||||||||||||||||||| ||||||||||||||    
T  45782787 tgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 26972330 - 26972396
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctcta 68  Q
    ||||| |||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||    
T  26972330 tgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcta 26972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 7700604 - 7700672
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctata 70  Q
    |||||||||||||||||| ||||||||  ||||||||| |||| |||||| ||||||||||||||||||    
T  7700604 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctctata 7700672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34108491 - 34108426
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||| ||||||| ||||||||  |||||| ||||||| |||||||||||||||||||||    
T  34108491 atgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 34828129 - 34828069
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagag 63  Q
    ||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||    
T  34828129 tgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 7700010 - 7700074
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| ||||||||  ||||||||| |||| |||||| ||||||||||||||    
T  7700010 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 7700208 - 7700272
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| ||||||||  ||||||||| |||| |||||| ||||||||||||||    
T  7700208 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 7700406 - 7700470
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| ||||||||  ||||||||| |||| |||||| ||||||||||||||    
T  7700406 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 31148354 - 31148296
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataa 60  Q
    |||||||||||||||||| ||||||||  ||||||||||||||  ||||||||||||||    
T  31148354 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5811289 - 5811354
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| || ||||| ||||||||||||||  |||||| |||||||| |||||    
T  5811289 atgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13108213 - 13108148
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||| |||||| |||||||| |||||    
T  13108213 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 36346691 - 36346756
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||| ||| ||||||||  ||||||||||||||  ||||| |||||||||||||||    
T  36346691 tgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 28307622 - 28307686
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||| ||||||||||||| ||||||||  |||||||||||||| || ||| ||||||||||||||    
T  28307622 tgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 30887764 - 30887700
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||| ||||| ||||||||  ||||||||||||||  | ||||||||||||||||||    
T  30887764 tgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23980196 - 23980137
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataa 60  Q
    ||||||||||||||||||| ||||||||  |||||||||||||  |||||| ||||||||    
T  23980196 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 21807451 - 21807509
Alignment:
Q  4 tcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataaga 62  Q
    |||||||| ||||||| |||||||   ||||||||| |||| |||||||||||||||||    
T  21807451 tcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38231358 - 38231293
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  38231358 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 22894744 - 22894680
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  22894744 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29460725 - 29460660
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||| |||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  29460725 atgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29471577 - 29471512
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||| |||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  29471577 atgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 34750025 - 34750089
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||| ||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  34750025 tgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 44000053 - 43999986
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctat 69  Q
    |||||||||||||||||| |||||||   |||||| ||||||| ||||||||||||||||||||||||    
T  44000053 tgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctctat 43999986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36370464 - 36370530
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||||||||||||||| |||||||   |||||| ||||||| ||||||||||||||||||||||    
T  36370464 atgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20856277 - 20856334
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtat 58  Q
    ||||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||    
T  20856277 atgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21559625 - 21559560
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||| ||||||||  ||||||||||||||  ||||| |||||||||||||||    
T  21559625 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 21559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46112070 - 46112136
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||||||||||||   |||||| |||||||  |||||||||||||||| ||||    
T  46112070 atgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 51339919 - 51339973
Alignment:
Q  13 tgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||    
T  51339919 tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctct 51339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 30735622 - 30735687
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||| |||||||||| ||||||||  ||||||||| |||| ||||||||| ||||||||||||    
T  30735622 tgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 36749470 - 36749405
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||| |||||||   |||||| || |||| ||||||||||||||||||||||    
T  36749470 tgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39072399 - 39072468
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctata 70  Q
    ||||||||||||| ||||| ||||||||  |||||| || |||| ||| ||||||||||| |||||||||    
T  39072399 atgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctctata 39072468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 50966194 - 50966130
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||  | ||||||||||  |||||||||||| |||  |||||||||||||||||||    
T  50966194 tgtcacaaatgtgaatagatgtaaaagggtgtatgccacct-aagatgttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 51069329 - 51069265
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||  | ||||||||||  |||||||||||| |||  |||||||||||||||||||    
T  51069329 tgtcacaaatgtgaatagatgtaaaagggtgtatgccacct-aagatgttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33732634 - 33732569
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  33732634 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36315626 - 36315561
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  36315626 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37914362 - 37914428
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||| |||||||| ||||||    
T  37914362 atgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44958178 - 44958116
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagag 63  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||    
T  44958178 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 14573059 - 14572994
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||||||||||||  || ||||||||||| |||||| |||||||||||||||    
T  14573059 tgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 16089886 - 16089821
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    |||||||||||||||||| ||||||||  |||||||||| ||| ||||||||||||||||||||||    
T  16089886 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6376359 - 6376424
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    ||||||||||||||||||| ||||||||  |||||||||||||  |||||| |||||||| |||||    
T  6376359 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 37498991 - 37499058
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctcta 68  Q
    ||||||||||||||||||  |||||||| ||||||||||  |||  ||||| || |||||||||||||    
T  37498991 atgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctcta 37499058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 3831033 - 3831087
Alignment:
Q  13 tgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctct 67  Q
    ||||||| ||||||||  |||||| ||||||| |||||||||||||||| |||||    
T  3831033 tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 34307265 - 34307329
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||| ||||||||||||||    
T  34307265 tgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 2509088 - 2509028
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataaga 62  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||    
T  2509088 tgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 39249990 - 39250057
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctat 69  Q
    |||||||||||||| ||| ||||||||  ||||||||||||||  |||||||||||||||||||||||    
T  39249990 tgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctctat 39250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29099881 - 29099821
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataaga 62  Q
    |||||||||||||||||||| || ||||| ||||||||| |||| |||||| ||||||||||    
T  29099881 atgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 46901862 - 46901934
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctctataaataa 75  Q
    |||||||||| ||||| | |||||||   |||||| ||||||| ||||||||||||||||||||| ||||||||    
T  46901862 tgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc-ataaataa 46901934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 28647415 - 28647353
Alignment:
Q  4 tcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataagagctc 66  Q
    |||||||| ||||||| |||||||  |||||||| |||| | ||||||||||||||| |||||    
T  28647415 tcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10147031 - 10146971
Alignment:
Q  1 atgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataag 61  Q
    ||||||||| |||||||||  || ||||  |||||||||||||| ||||| ||||||||||    
T  10147031 atgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 6782 - 6722
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataaga 62  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||    
T  6782 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 87291 - 87350
Alignment:
Q  2 tgtcacaaatgtgtgtggatgtaaaagaatgtatgccacctaaagtggttcatgtataaga 62  Q
    |||||||||||||||||| |||| |||  |||||||||||||| |||||||||||||||||    
T  87291 tgtcacaaatgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University