View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17987_high_11 (Length: 217)
Name: NF17987_high_11
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 29678375 - 29678555
Alignment:
| Q |
18 |
aaacaaatgtataggttttgtgtgacatgcactcggaagcctaccacatgcactttctttatgttctaggctttagatatatgaagaaaatgatttgttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29678375 |
aaacaaatgtataggttttgtgtgacatgcactcggaagcctaccacatgcactttctttatgttctaggctttagatatatgaagaaaatgatttgttt |
29678474 |
T |
|
| Q |
118 |
gatcattttatgatcctttctgattttgggctccttttctaattctttttccaaaagcaagtcagggtttgtaaaagggttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29678475 |
gatcattttatgatcctttctgattttgggctccttttctaattctttttcc-aaagcaagtcagggtttgtaaaagggttc |
29678555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University