View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17987_high_4 (Length: 434)

Name: NF17987_high_4
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17987_high_4
NF17987_high_4
[»] chr8 (2 HSPs)
chr8 (1-396)||(27647335-27647724)
chr8 (250-292)||(28833614-28833656)
[»] chr5 (1 HSPs)
chr5 (250-305)||(14013812-14013867)
[»] chr1 (1 HSPs)
chr1 (250-301)||(36658677-36658728)
[»] chr6 (1 HSPs)
chr6 (210-284)||(2609377-2609453)
[»] chr4 (3 HSPs)
chr4 (122-194)||(50300713-50300785)
chr4 (261-305)||(50300577-50300621)
chr4 (271-305)||(22494860-22494894)
[»] scaffold0011 (1 HSPs)
scaffold0011 (250-305)||(9808-9863)
[»] chr2 (1 HSPs)
chr2 (250-305)||(34445825-34445880)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 27647335 - 27647724
Alignment:
Q  1 agcttgaaaaatgcaacaatataaaatttagggaaacctttagcaatgaccatgacgaagataaaatttaagagaactcacaaaatttataattccatac 100  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||     
T  27647335 agcttgacaaatccaacaatataaaatttagggaaacctttagcaatgaccatgacgaagataaaatttaagagaattcacaaaatttataatttcatat 27647434  T
Q  101 ggaagatacatcaagtcatgatcaaggttgttagactcgtgagtctacacagacttgaaaaaggtcagtagacttgattcatagactcgactcgactcgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     ||||||||||||    
T  27647435 ggaagatacatcaagtcatgatcaaggttgttagactcgtgagtctacacagacttgaaaaaggtctgtagacttgattcata-----gactcgactcgt 27647529  T
Q  201 agactcataaaaatgactttaaaaaacctataagtgacacataaagaacatatatataacaaaataccaattaacataaaaattcaaactccgtaaccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27647530 agactcataaaaatgactttaaaaaacctataagtgacacataaagaacatatatataacaaaataccaattaacataaaaattcaaactccgtaaccaa 27647629  T
Q  301 cttgtaacnnnnnnntctccataataaagcaagtaaagtcgtaaaagtaggtagataaaatcctaattccttcccaattgtatactacatgaagct 396  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  27647630 cttgtaac-aaaaaatctccataataaagcaagtaaagtcgtaaaagtaggtagataagatcctaattccttcccaattgtatactacataaagct 27647724  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 28833614 - 28833656
Alignment:
Q  250 atatatataacaaaataccaattaacataaaaattcaaactcc 292  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  28833614 atatatataacaaaataccaattaacataaaaattaaaactcc 28833656  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 14013812 - 14013867
Alignment:
Q  250 atatatataacaaaataccaattaacataaaaattcaaactccgtaaccaacttgt 305  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  14013812 atatatataacaaaataccaattaacgtaaaaattcaaactccataaccaacttgt 14013867  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 36658677 - 36658728
Alignment:
Q  250 atatatataacaaaataccaattaacataaaaattcaaactccgtaaccaac 301  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  36658677 atatatataacaaaataccaattaatataaaaattcaaactccataaccaac 36658728  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 2609377 - 2609453
Alignment:
Q  210 aaaatgactttaaaaaacctataagtgacacataaa-ga-acatatatataacaaaataccaattaacataaaaatt 284  Q
    |||||||| ||||||| |||||| |||| ||| ||| || | |||||||||||||||||||||||||||||||||||    
T  2609377 aaaatgaccttaaaaatcctatatgtgatacagaaatgagaaatatatataacaaaataccaattaacataaaaatt 2609453  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 50300785 - 50300713
Alignment:
Q  122 tcaaggttgttagactcgtgagtctacacagacttgaaaaaggtcagtagacttgattcatagactcgactcg 194  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||  |||||||  |||| || ||||||||||    
T  50300785 tcaaggttgttaaactcgtgagtctatacagactcgaaaaaggtttgtagactcaattcgtatactcgactcg 50300713  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 50300621 - 50300577
Alignment:
Q  261 aaaataccaattaacataaaaattcaaactccgtaaccaacttgt 305  Q
    ||||||||||||||||| |||||||||||||| || |||||||||    
T  50300621 aaaataccaattaacattaaaattcaaactccatacccaacttgt 50300577  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 22494894 - 22494860
Alignment:
Q  271 ttaacataaaaattcaaactccgtaaccaacttgt 305  Q
    |||||||||||||||||||||| ||||||||||||    
T  22494894 ttaacataaaaattcaaactccataaccaacttgt 22494860  T

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Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 9808 - 9863
Alignment:
Q  250 atatatataacaaaataccaattaacataaaaattcaaactccgtaaccaacttgt 305  Q
    |||||| ||||||||||||||||| |||||||||| ||| ||| ||||||||||||    
T  9808 atatatgtaacaaaataccaattagcataaaaattgaaattccataaccaacttgt 9863  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 34445880 - 34445825
Alignment:
Q  250 atatatataacaaaataccaattaacataaaaattcaaactccgtaaccaacttgt 305  Q
    |||||||||||||||||||||||||  |||| |||||||||||  |||||||||||    
T  34445880 atatatataacaaaataccaattaatctaaacattcaaactccaaaaccaacttgt 34445825  T

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