View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17987_high_8 (Length: 250)
Name: NF17987_high_8
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 32905385 - 32905157
Alignment:
| Q |
1 |
caaaaatctgatattttttccttattaagaactattgagtataaaagttgaaccctcttattttggtttaacaactcacactatgaagataatatgataa |
100 |
Q |
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| T |
32905385 |
caaaaatctgatattttttccttattaagaactattgagtataaaagttgaaccctcttattttggtttaacaactcacactatgaagataatatgataa |
32905286 |
T |
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| Q |
101 |
atgtgtaaatgcatgtttcttgtggatcaataatccggacttcaccaagctttcataatttcaatggatggtttggactccacctatatttttataattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32905285 |
atgtgtaaatgcatgtttcttgtggatcaataatccggacttcaccaagctttcataatttcaatggatggtttggactccacctata--tttataattt |
32905188 |
T |
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| Q |
201 |
ggatttgatggatattgtttaaaataactct |
231 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32905187 |
tgatttgatggatattgtttaaaataactct |
32905157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 32871021 - 32870922
Alignment:
| Q |
135 |
ccggacttcaccaagctttcataatttcaatggatggtttggactccacctatatttttataatttggatttgatggatattgtttaaaataactctata |
234 |
Q |
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||||||| |||| ||| || ||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||| |||| |||||| |
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| T |
32871021 |
ccggactccacctagccttgataatttcaatggatggtttgaactccaccta-gcttttataattttgatttgatgaatattgtttacaatatttctata |
32870923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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