View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17987_high_9 (Length: 242)
Name: NF17987_high_9
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 9803419 - 9803631
Alignment:
| Q |
11 |
tgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatct |
110 |
Q |
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| T |
9803419 |
tgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatct |
9803518 |
T |
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| Q |
111 |
ctctagatgaatctaattctattttttattcctacctgagagcatcatgcttgttaaatccacgctcgttatggaaaaatgttcccttgatcacctgttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9803519 |
ctctagatgaatctaattctattttttattcctacctgagagcatcatgcttgttaaatccacgctcgttacggaaaaatgttcccttgatcacctgttc |
9803618 |
T |
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| Q |
211 |
cccagaagtttgt |
223 |
Q |
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||||||||||||| |
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| T |
9803619 |
cccagaagtttgt |
9803631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 37738420 - 37738521
Alignment:
| Q |
16 |
tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta |
115 |
Q |
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||||||||| |||||||||||||||||||| |||| |||| |||||||||||| ||||| |||||||| || |||||||||||||| || || |||||| |
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| T |
37738420 |
tgaagaaaaaggaaaatattccaaattcttttcagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagagataaagatttctcta |
37738519 |
T |
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| Q |
116 |
ga |
117 |
Q |
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|| |
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| T |
37738520 |
ga |
37738521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 19814291 - 19814388
Alignment:
| Q |
11 |
tgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatat |
108 |
Q |
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| T |
19814291 |
tgagatgaagaaaatggaaaatattccaaattcttcacaaaagaagaaggacaaggaagtatatgatcatggaaaacaacatttttagaaatgaatat |
19814388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 18476720 - 18476614
Alignment:
| Q |
11 |
tgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatct |
110 |
Q |
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||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||| |||||||| || ||||||||| |||||||||| | |
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| T |
18476720 |
tgagatggagaaaatggaaattattccaaattcttcattgaagaagtaggataaggaagaatatgatcatgaaagatgacatttctatagatgaatattt |
18476621 |
T |
|
| Q |
111 |
ctctaga |
117 |
Q |
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||||||| |
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| T |
18476620 |
ctctaga |
18476614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 3004024 - 3003923
Alignment:
| Q |
16 |
tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta |
115 |
Q |
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||||||||| |||||||||||||||||||| |||| |||| |||||||||||| ||||| |||||||| || |||||||||||||| || || |||||| |
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| T |
3004024 |
tgaagaaaaaggaaaatattccaaattcttttcagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagagataaagatttctcta |
3003925 |
T |
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| Q |
116 |
ga |
117 |
Q |
| |
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|| |
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| T |
3003924 |
ga |
3003923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 23681322 - 23681221
Alignment:
| Q |
16 |
tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta |
115 |
Q |
| |
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||||||||| |||||||||||||||||||| |||| |||| |||||||||||| ||||| |||||||| || | |||||||||||| || || |||||| |
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| T |
23681322 |
tgaagaaaaaggaaaatattccaaattcttgtcagatgaaggaggataaggaagaatatgatcatgaaaaattatatttctagagataaagatttctcta |
23681223 |
T |
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| Q |
116 |
ga |
117 |
Q |
| |
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|| |
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| T |
23681222 |
ga |
23681221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 36732278 - 36732380
Alignment:
| Q |
15 |
atgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctct |
114 |
Q |
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|||||||||| |||||||||||||||||||| ||| |||| |||||||||||| ||||| |||||||| || ||||||||||| || || || ||||| |
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| T |
36732278 |
atgaagaaaaaggaaaatattccaaattcttttaagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagatataaagatttctct |
36732377 |
T |
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| Q |
115 |
aga |
117 |
Q |
| |
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||| |
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| T |
36732378 |
aga |
36732380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 23885012 - 23885073
Alignment:
| Q |
16 |
tgaagaaaatggaaaatattccaa---attcttcacagaagaagaaggataaggaagtatat |
74 |
Q |
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|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||| |
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| T |
23885012 |
tgaagaaaatggaaaatattccaaattattcttctcagatgaagaaggataaggaagaatat |
23885073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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