View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17987_low_1 (Length: 542)
Name: NF17987_low_1
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_low_1 |
 | |
|
| [»] scaffold0477 (2 HSPs) |
| |
|
| [»] chr6 (35 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| |
|
| [»] scaffold0475 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0477 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 166 - 542
Target Start/End: Complemental strand, 4879 - 4503
Alignment:
| Q |
166 |
taaaataaattcaagaggaaatcacagaaccacgtttcatagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4879 |
taaaataaattcaagaggaaatcacacaaccacgtttcatagaatatataactttaatctagcattgtttaagcatgacctccttaatcactttgtccaa |
4780 |
T |
|
| Q |
266 |
gttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcctgacatc |
365 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4779 |
gttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcccgacatc |
4680 |
T |
|
| Q |
366 |
aattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctcccatatataggagatatactgacagtttgttggct |
465 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
4679 |
aattcattgatcatattcgttaccttctctctcttcacattagtatcaatttccataccagtctcccatatatgggagatataccgatagtttgttggct |
4580 |
T |
|
| Q |
466 |
gatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579 |
gatcggcgaaaaatggccaacacaacattggcactcctacacatatgctttcaatggttgagttccatccgcaatga |
4503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 5287 - 5125
Alignment:
| Q |
13 |
aaaatatatatacaatttcacattgcattagttata--acttagaaccatagttttcaatcacaccaccaacaaatgacataataaatcacacttatatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5287 |
aaaatatatatacaatttcacattgcattagttatataacttataaccatagttttcaatcgcaccaccaacaaatgacataacaaatcacacttatatg |
5188 |
T |
|
| Q |
111 |
gcttacattttatatatgtttagcacctcacactaaatgcttcgttttttaaccataaaataaa |
174 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5187 |
gcttaca-tttatatatgtttagcacctcacactaaatgcatcgttttttaaccataaaataaa |
5125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 35)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 83 - 542
Target Start/End: Original strand, 4622001 - 4622457
Alignment:
| Q |
83 |
aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaa--atgcttcgttttttaaccataaaataaattcaag |
180 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||| |||||| |||| ||||||||||||||| || || |||||| || |||||||||||||||| |
|
|
| T |
4622001 |
aaatgacataataagttacatttatatggcttagattttaaatataactagcacctcacactatgcatcattatttttttgacaataaaataaattcaag |
4622100 |
T |
|
| Q |
181 |
aggaaatcacagaaccacgtttcatagaataaatcactttagtct-agcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaac |
279 |
Q |
| |
|
|| | || ||| |||||| |||| | | ||||||| | | || ||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4622101 |
agaagatgacacaaccacatttcctggc------cactttaattttagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaac |
4622194 |
T |
|
| Q |
280 |
agccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcag |
379 |
Q |
| |
|
| |||| ||| ||||| |||| |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
4622195 |
aaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatcttctttcctttatctcccgacatcaattcattgatcag |
4622294 |
T |
|
| Q |
380 |
attcgttaccttctctctcgtcacattagtatcaatttccataccagtctcccatatataggagatatactgacagtttgttggctgatcggcgaaaaat |
479 |
Q |
| |
|
||||| |||| |||||| |||||||||||| ||||| || ||| |||||||| || | ||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
4622295 |
attcgacacctcctctcttttcacattagtattgatttcgattccaatctcccatgaattgcagatatatctacagtttgttggctgatcagcgaaaaat |
4622394 |
T |
|
| Q |
480 |
ggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
4622395 |
ggccaacacagcattgaaactccagcacatatgctttcggtggttgaattccatccacaatga |
4622457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 132 - 542
Target Start/End: Complemental strand, 4256841 - 4256428
Alignment:
| Q |
132 |
agcacctcacactaaatgcttcgt--tttttaaccataaaataaattcaagaggaaatcacagaaccacgtttcatagaataaatcactttagtctagca |
229 |
Q |
| |
|
||||||||||||||||||| || | ||||| || |||||| ||||||||||||| || ||| |||||| ||||||||||||||| ||| || ||||| | |
|
|
| T |
4256841 |
agcacctcacactaaatgcatcatattttttgacaataaaacaaattcaagaggagattacacaaccacatttcatagaataaattactataatctagta |
4256742 |
T |
|
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| ||| || |||||||||| ||||| |||||||||||| |||||| || |
|
|
| T |
4256741 |
ttgtttaagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatgacc |
4256642 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||| |||||| |||||||||||| ||||| || ||| ||| |
|
|
| T |
4256641 |
ttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacattagtattgatttcaattccaatct |
4256542 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttgg-ctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
||||| | ||| | |||||||||||| |||||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
4256541 |
cccattcgctacaaataaatctacagtttgttggtctgatcagcaaaaaatggccaacacaacattggaactccggcacaaatgctttcaatggttgagt |
4256442 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
4256441 |
tccatcctcaatga |
4256428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 215 - 542
Target Start/End: Complemental strand, 4260298 - 4259971
Alignment:
| Q |
215 |
cactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttc |
314 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||| |||||| ||||||||||||||||| ||||| | ||| |||||||||||||||||||||||| || |
|
|
| T |
4260298 |
cactttaatctagtattgtttgagcatgacctgcttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctc |
4260199 |
T |
|
| Q |
315 |
ttcaactccatggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaa |
414 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| ||||||||||| | |||||||||||| |||| |||| ||||| |||||||||||| || |
|
|
| T |
4260198 |
ttcaactccatgaccttttgcctcatcttctttccttcttctcctgacataatttcattgatcagcttcgccacctcatctcttttcacattagtattaa |
4260099 |
T |
|
| Q |
415 |
tttccataccagtctcccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgct |
514 |
Q |
| |
|
|||| || ||| |||||||| | | ||| | |||||||||||||||||| || ||||||||||||||||||||||| ||| | ||||| ||||| |
|
|
| T |
4260098 |
tttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaacattggaacttcggcacaaatgct |
4259999 |
T |
|
| Q |
515 |
ttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4259998 |
ttcaatggttgagttccatccgcaatga |
4259971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 229 - 542
Target Start/End: Original strand, 4625953 - 4626266
Alignment:
| Q |
229 |
attgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggc |
328 |
Q |
| |
|
|||||||||||| ||| || ||||||| ||| |||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4625953 |
attgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggc |
4626052 |
T |
|
| Q |
329 |
cttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtc |
428 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||||| |||||||||| ||| |||| ||| ||| ||||||||| ||| |||||||| ||| || |
|
|
| T |
4626053 |
cttttgcctcatcttctttccgttatctcctgccatcaatgcattgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaatc |
4626152 |
T |
|
| Q |
429 |
tcccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
|||||| || | | ||||| ||| |||||||||||||| || ||| ||||||||||| |||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
4626153 |
tcccattcattgcaaatatatctacaatttgttggctgatcagcaaaatttggccaacacagcattggaactccagcgcatatgctttcaatggttgagt |
4626252 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
4626253 |
tccatccacaatga |
4626266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4601792 - 4602104
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |||| |||||||||| |||| | || ||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
4601792 |
ttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggcc |
4601891 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
||||||||||||||| | ||||||||||| | |||| |||||||||||| |||| | || ||||||| ||||||| ||||| |||||||||||| ||| |
|
|
| T |
4601892 |
ttttgcctcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaatct |
4601991 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
||||| || | ||| | ||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||| |||||||||| |
|
|
| T |
4601992 |
cccattcattacaaataaatctacagtttgttggctgatcggcaaaaaaaggccaacacaacatcggcactccagcacatatgctttcagtggttgagtt |
4602091 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
4602092 |
ccatccacaatga |
4602104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4617025 - 4617337
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| || |||||||| ||||||| |||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617025 |
ttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcc |
4617124 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| | |||| |||||||||||| || | | || ||||||| ||||||| ||||| |||||||||||| ||| |
|
|
| T |
4617125 |
ttttgcttcattttctttcctttatctccggctatcacttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaatct |
4617224 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
||||| || | ||| | ||||| ||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| |||||| ||||||| || |
|
|
| T |
4617225 |
cccattcattacaaataaatctacagtctgttggctggtcggcaaaaaatggccaacacaacattggcactccagcgcatatactttcagtggttgaatt |
4617324 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4617325 |
ccatccgcaatga |
4617337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 83 - 542
Target Start/End: Complemental strand, 4267443 - 4266983
Alignment:
| Q |
83 |
aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaaatgcttcgt--tttttaaccataaaataaattcaag |
180 |
Q |
| |
|
|||| ||||||||||||| ||| | ||||||| |||||| |||| ||||||||||||||||||| || | ||||| || |||||| ||||||||| |
|
|
| T |
4267443 |
aaatcacataataaatcatactaa-atggcttttattttaaatataacaagcacctcacactaaatgcatcatattttttgacaataaaacaaattcaag |
4267345 |
T |
|
| Q |
181 |
aggaaatcacagaaccacgtttcatagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaaca |
280 |
Q |
| |
|
|||| || ||| ||| || ||| |||||||||| |||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
4267344 |
aggagattacacaactacaattcctagaataaatgacttcaatctagtattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaa |
4267245 |
T |
|
| Q |
281 |
gccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcaga |
380 |
Q |
| |
|
|||| ||| || |||||||| ||||||||| |||||||||||| | | |||||| ||||| | ||||||| ||||| |||||||||||||| | |
|
|
| T |
4267244 |
accaccaggtcttgtgttctcttctgccttcctcttcaactccaagacattttgcttcatcatatttcctttctctcccaccatcaattcattgactaac |
4267145 |
T |
|
| Q |
381 |
ttcgttaccttctctctcgtcacattagtatcaatttccataccagtctcccatatataggagatatactgacagtttgttggctgatcggcgaaaaatg |
480 |
Q |
| |
|
||| || | |||||| ||||||| |||| ||||| | ||| |||||||| |||| | ||| | |||||||||||||||||| | || |||| |
|
|
| T |
4267144 |
ttctcgacgtcatctctcttcacatttgtattgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttggctgatcaccaaagaatg |
4267045 |
T |
|
| Q |
481 |
gccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
4267044 |
gccaacacaacattggcactccagcacatatgctttcagtggttgaattccatccgcaatga |
4266983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4560509 - 4560821
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| || | ||| || |||| | |||| ||||| ||||||| |||||||||| |
|
|
| T |
4560509 |
ttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggcc |
4560608 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| ||| ||| || | ||| ||| | ||||| ||||||||||| | ||| ||| |
|
|
| T |
4560609 |
ttttgcctcatcttctttcctttatctcaggacatcaattcattgaccagtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatct |
4560708 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
|||| || | | ||||| ||||||| ||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
4560709 |
tccattcattgcaaatatatcttcagtttgctggctgatctgcaaaaaatggccaacacaacattggaactccagcacatatgctttcagtggttgagtt |
4560808 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4560809 |
ccatccgcaatga |
4560821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 230 - 542
Target Start/End: Complemental strand, 4613847 - 4613535
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
|||||| |||| ||||| || |||||||||||||||||||| |||||||| || | || || |||| |||||||||||||||||||||||| || ||| |
|
|
| T |
4613847 |
ttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgcc |
4613748 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||||||||||||| ||| ||| ||||| |||||| ||||||| || ||||||||||| ||| | | |
|
|
| T |
4613747 |
ttttgcctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctcttcacattggtgtcaatttccatcccaattt |
4613648 |
T |
|
| Q |
430 |
cccatatataggagatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
||||| || | | ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
4613647 |
cccattcattgcatatatatctg-cagtttgctggctgatccgcgaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgagt |
4613549 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
4613548 |
tccatccacaatga |
4613535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4574311 - 4574623
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||||| || | ||| || |||| | |||| |||||||||||| ||| ||||| |
|
|
| T |
4574311 |
ttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggct |
4574410 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| |||| ||| ||| | ||||||||||| |||||| | ||| ||| |
|
|
| T |
4574411 |
ttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatct |
4574510 |
T |
|
| Q |
430 |
cccatatataggagatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
||||| || | | ||||| ||| ||||||| ||||||||| | |||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
4574511 |
cccattcattgcaaatatatctg-cagtttgctggctgatccgaaaaaaatggccaacataacattggaactccagcacatatgctttcagtggttgagt |
4574609 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4574610 |
tccatccgcaatga |
4574623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 211 - 542
Target Start/End: Original strand, 4516305 - 4516636
Alignment:
| Q |
211 |
aaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgcctt |
310 |
Q |
| |
|
||||||||||| |||| |||||| |||| ||||||||||||||||| |||||||||| |||||||| |||| || || |||| |||||||||||| |
|
|
| T |
4516305 |
aaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgcctt |
4516404 |
T |
|
| Q |
311 |
cttcttcaactccatggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagta |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||| |||| ||||||| ||||||| ||| |
|
|
| T |
4516405 |
cttcttcaattccatggccttttgcctcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattggta |
4516504 |
T |
|
| Q |
411 |
tcaatttccataccagtctcccatatataggagatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacat |
509 |
Q |
| |
|
|||||||| ||| |||||||| || | | ||||| ||| || ||||||||||| || || ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4516505 |
tcaatttctgctccaatctcccattcattgcaaatatatctg-caatttgttggctgctcagcaaaaaaaggccaacacaacattggtactccggcacag |
4516603 |
T |
|
| Q |
510 |
atgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
|||||||| || || ||||||||||| |||||| |
|
|
| T |
4516604 |
atgctttccattgtggagttccatccacaatga |
4516636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4563714 - 4564026
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||| || | || || ||||| ||||| | |||||||||||||| || ||| |
|
|
| T |
4563714 |
ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgcc |
4563813 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||||| || ||| |||| |||||| | ||||| ||||| |||||||| ||| ||| |
|
|
| T |
4563814 |
ttttgccgcatcttctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatct |
4563913 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
||||| || | | ||| |||||||||||||||||| | || |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
4563914 |
cccattcattgtaaataagtctacagtttgttggctgatcaccaaagaatggccaacacaacattggaactccagcacatatgctttcagtggttgagtt |
4564013 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4564014 |
ccatccgcaatga |
4564026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4480696 - 4481008
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| || |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
4480696 |
ttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggcc |
4480795 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||||| |||||||| ||||||| ||||| || |||||||||||| | || || | |||||| ||||||| ||||| ||||| | ||| ||| |
|
|
| T |
4480796 |
ttttgcttcatcttctttcctttctctcccaccaacaattcattgattaacctctccacatcttctctcttcacattggtatcgatttcgagtccaatct |
4480895 |
T |
|
| Q |
430 |
cccatatataggagat-atactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
||||| || | | || || || || ||| | |||||||||||| || |||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |
|
|
| T |
4480896 |
cccattcattgcaaataattct-acggttaggtggctgatcggcaaagaatggccaacacaacattggcactccagcacatacactttcagtggttgagt |
4480994 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4480995 |
tccatccgcaatga |
4481008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4557128 - 4557440
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||| ||| || |||| |||||| |||||| |||||| ||| || | |
|
|
| T |
4557128 |
ttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctcaattatc |
4557227 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||| || ||||||| ||||||| || || |||||||||||||| || |||| ||||| |||||| ||||||| || ||||||||||| ||| ||| |
|
|
| T |
4557228 |
tttttccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaatct |
4557327 |
T |
|
| Q |
430 |
cccatatataggagatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
||||| ||| | | ||||| ||| ||||||| ||||||||| || ||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||| |
|
|
| T |
4557328 |
cccatgtattgcaaatatatctg-cagtttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcagatatgctttcagtggttgagt |
4557426 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
4557427 |
tccatccacaatga |
4557440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 233 - 542
Target Start/End: Original strand, 4592237 - 4592546
Alignment:
| Q |
233 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
332 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||| |||||||| || | ||| || ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
4592237 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgccttt |
4592336 |
T |
|
| Q |
333 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
432 |
Q |
| |
|
| |||||||||| ||||||| ||||| ||||||||||||||| || ||| |||| ||||||| | ||||| |||||||||||||| ||| |||||| |
|
|
| T |
4592337 |
ttcctcatcttctttcctttctctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaatctccc |
4592436 |
T |
|
| Q |
433 |
atatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttcca |
532 |
Q |
| |
|
|| || | | ||| |||||||||||||||||| || |||||||||||||||||||| | ||| |||||||| |||||| ||||||||||||| |
|
|
| T |
4592437 |
attcattgtaaataagtctacagtttgttggctgatcactaaagaatggccaacacaacattggaattccagcacatatactttcagtggttgagttcca |
4592536 |
T |
|
| Q |
533 |
tccgcaatga |
542 |
Q |
| |
|
||| |||||| |
|
|
| T |
4592537 |
tccacaatga |
4592546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 233 - 535
Target Start/End: Original strand, 4585642 - 4585944
Alignment:
| Q |
233 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
332 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| || | ||| || |||| |||||| ||||||||||||||||| || |||||| |
|
|
| T |
4585642 |
tttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttt |
4585741 |
T |
|
| Q |
333 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
432 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||||||||| || ||| |||| ||||||| ||||||| || |||| |||||| ||| |||||| |
|
|
| T |
4585742 |
tgcctcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctccc |
4585841 |
T |
|
| Q |
433 |
atatataggagat-atactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttcc |
531 |
Q |
| |
|
|| || | | || || || |||||||||||||||||| || | |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
4585842 |
attcattgcaaataattct-acagtttgttggctgatcagcaatgaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttcc |
4585940 |
T |
|
| Q |
532 |
atcc |
535 |
Q |
| |
|
|||| |
|
|
| T |
4585941 |
atcc |
4585944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 233 - 535
Target Start/End: Original strand, 4570978 - 4571280
Alignment:
| Q |
233 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
332 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||| || |||| |||||| ||||||||||||| |||||| ||| |
|
|
| T |
4570978 |
tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatattt |
4571077 |
T |
|
| Q |
333 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
432 |
Q |
| |
|
| |||||||||| ||||||||||||| |||||||||||||| || |||| |||| | |||| ||||||||||||| ||||| || ||| |||||| |
|
|
| T |
4571078 |
ttcctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattccaatctccc |
4571177 |
T |
|
| Q |
433 |
atatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttcca |
532 |
Q |
| |
|
|| ||| | ||||||| |||||||| ||||||||| || ||||||||| ||||||||||||| ||||| | | |||||||||| | ||||||||||| |
|
|
| T |
4571178 |
atgtattgcagatatatctacagtttgctggctgatcagcaaaaaatggctaacacaacattggaactccagtagatatgctttcggtcgttgagttcca |
4571277 |
T |
|
| Q |
533 |
tcc |
535 |
Q |
| |
|
||| |
|
|
| T |
4571278 |
tcc |
4571280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 243 - 542
Target Start/End: Original strand, 4579448 - 4579747
Alignment:
| Q |
243 |
acctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatct |
342 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| | ||| || |||| |||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
4579448 |
acctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatct |
4579547 |
T |
|
| Q |
343 |
tcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctcccatatatagga |
442 |
Q |
| |
|
|| || |||| ||||| |||||||||||| | ||| ||| |||| ||||||| |||||||||| || ||||| || ||| | | |||| ||| | | |
|
|
| T |
4579548 |
tctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacattagtgtcgatttcaattccaattttccatgtattgca |
4579647 |
T |
|
| Q |
443 |
gatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatg |
541 |
Q |
| |
|
| ||| ||| ||| || ||| ||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
4579648 |
taaatatctg-cagcttactgggtgatcagcgaaaaatggccaacacaacattggaactccagcagatatgctttcagtgattgagttccatccgcaatg |
4579746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 229 - 538
Target Start/End: Original strand, 3171743 - 3172052
Alignment:
| Q |
229 |
attgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggc |
328 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| | || || | |||||||||||||||||||||||||||||| |
|
|
| T |
3171743 |
attgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggc |
3171842 |
T |
|
| Q |
329 |
cttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtc |
428 |
Q |
| |
|
| |||||||||||||| ||||||| ||||| ||||||||| |||||||| ||| ||||| | ||||| | ||||| |||||||||||||| ||| || |
|
|
| T |
3171843 |
cctttgcctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaatc |
3171942 |
T |
|
| Q |
429 |
tcccatatataggagat-atactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgag |
527 |
Q |
| |
|
| |||| | | | || || || || ||| | ||| ||||| || |||||||||| |||||||||||| | ||| ||||||| ||||| |||||||| |
|
|
| T |
3171943 |
ttccattcttggcaaataattct-actgttaggtggttgatcagcaaaaaatggcctacacaacattggcattccagcacatacactttccgtggttgag |
3172041 |
T |
|
| Q |
528 |
ttccatccgca |
538 |
Q |
| |
|
||||||||||| |
|
|
| T |
3172042 |
ttccatccgca |
3172052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 243 - 542
Target Start/End: Original strand, 4598187 - 4598486
Alignment:
| Q |
243 |
acctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatct |
342 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || | | | || || | |||||| |||||| ||||||| || || | |||||||||||| | |
|
|
| T |
4598187 |
acctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattt |
4598286 |
T |
|
| Q |
343 |
tcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctcccatatatagga |
442 |
Q |
| |
|
|| ||||||||||||| ||||||||||| |||| ||| ||| |||| ||||||| |||||||||| ||||||| || ||| |||||||| || | | |
|
|
| T |
4598287 |
tctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccattcattgca |
4598386 |
T |
|
| Q |
443 |
gatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatg |
541 |
Q |
| |
|
||||| ||| ||||| | | ||||||| |||||||| || |||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
4598387 |
aatatatctg-cagttggcttgctgatccgcgaaaaagggacaacacaacattggcactccggcacatatactttcagtggttgagttccatccgcaatg |
4598485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 233 - 542
Target Start/End: Complemental strand, 4490481 - 4490172
Alignment:
| Q |
233 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
332 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||| | || |||| |||| |||||||||||||||||||| | |||||| |
|
|
| T |
4490481 |
tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt |
4490382 |
T |
|
| Q |
333 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
432 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||||||||| ||| ||||| |||||| | ||||| |||||||||| ||| ||| |||||| |
|
|
| T |
4490381 |
tgcctcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctccc |
4490282 |
T |
|
| Q |
433 |
atatataggagat-atactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttcc |
531 |
Q |
| |
|
|| | | | || || || || | | ||| ||||| || ||||||||||||||||||||||| ||||| |||||||| || || ||| ||||||||| |
|
|
| T |
4490281 |
attcttcgcaaataattct-actgctaagtggttgatcagcaaaaaatggccaacacaacattggcactccagcacatatactctccatgattgagttcc |
4490183 |
T |
|
| Q |
532 |
atccgcaatga |
542 |
Q |
| |
|
|||| |||||| |
|
|
| T |
4490182 |
atccacaatga |
4490172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 542
Target Start/End: Complemental strand, 4504523 - 4504214
Alignment:
| Q |
233 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
332 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| |||| | | || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4504523 |
tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt |
4504424 |
T |
|
| Q |
333 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
432 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||| || || ||| ||||| |||||| ||||| | |||||| | ||| ||| |||||| |
|
|
| T |
4504423 |
tgcctcatcttctttcctttctctcccaccatcaattcattaataagtttctctacctcttctctctgtacattggcatcaatcttcatcccaatctccc |
4504324 |
T |
|
| Q |
433 |
atatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttcca |
532 |
Q |
| |
|
|| | | | ||| | | || ||||||||| | ||||||||||||||||||||||| ||||| ||||| | |||||| ||||||||||||| |
|
|
| T |
4504323 |
attcttcgcaaataatgttgctattaagtggctgatcagaaaaaaatggccaacacaacattggcactccagcacaaacactttcagtggttgagttcca |
4504224 |
T |
|
| Q |
533 |
tccgcaatga |
542 |
Q |
| |
|
||| |||||| |
|
|
| T |
4504223 |
tccacaatga |
4504214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4505860 - 4506172
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||| ||| || || | ||||| |||| |||| |||||||||||| || |
|
|
| T |
4505860 |
ttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatgacc |
4505959 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||| ||||||||| ||||||| ||||| ||| | ||||| || ||| ||| ||| || ||||| ||||||||||||||||||| || ||| ||| |
|
|
| T |
4505960 |
tttttcctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctacattttctctattcacattagtatcaatttcgattccaatct |
4506059 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
|| || || | | ||| | |||||||||||| ||||| | || || |||||||||| |||||| ||||| || |||||||||||| |||||||||| |
|
|
| T |
4506060 |
ccaattcattgcaaataaatctacagtttgttggttgatcaccaaagaacggccaacacagcattggcactccagcgcatatgctttcagtggttgagtt |
4506159 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4506160 |
ccatccgcaatga |
4506172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 200 - 436
Target Start/End: Complemental strand, 4299899 - 4299669
Alignment:
| Q |
200 |
tttcatagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttc |
299 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||| ||| | |||||| |
|
|
| T |
4299899 |
tttcctagaataaatcactttattctaatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttc |
4299800 |
T |
|
| Q |
300 |
tcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcg |
399 |
Q |
| |
|
|||||||| |||||||||| | |||||||| |||||||| |||||| ||||| |||||||||||||||||| || |||| ||||||| |
|
|
| T |
4299799 |
tcctctgc------cttcaactcccttgccttttgtctcatcttatctcctttctctcccaccatcaattcattgatcagcttttccacctcctctctcc |
4299706 |
T |
|
| Q |
400 |
tcacattagtatcaatttccataccagtctcccatat |
436 |
Q |
| |
|
||||||| ||||| ||||| || ||| |||||||||| |
|
|
| T |
4299705 |
tcacatttgtatcgatttcgattccaatctcccatat |
4299669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 230 - 542
Target Start/End: Complemental strand, 4515250 - 4514938
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||| ||||||| | || | | | || |||| ||| ||||||||||| ||||||||||| || |
|
|
| T |
4515250 |
ttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccataacc |
4515151 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||| |||||| || ||||||| ||||| |||||||||||||| || || |||| ||||||| ||||||| |||| ||||| || ||| ||| |
|
|
| T |
4515150 |
tttttcctcattttatttcctttctctcccaccatcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaatct |
4515051 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
||||| || | | ||| | |||||||||||| ||||| | || ||| ||||||| | |||||| ||||| || |||||||| ||| |||||||||| |
|
|
| T |
4515050 |
cccattcattgcaaataaatctacagtttgttggttgatcaccaaagaattgccaacaaagcattggcactccagcgcatatgctctcagtggttgagtt |
4514951 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4514950 |
ccatccgcaatga |
4514938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 246 - 542
Target Start/End: Original strand, 4568072 - 4568371
Alignment:
| Q |
246 |
tccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttc---ttcttcaactccatggccttttgcctcatct |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| ||| || |||| || |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4568072 |
tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct |
4568171 |
T |
|
| Q |
343 |
tcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctcccatatatagga |
442 |
Q |
| |
|
| ||||||| | ||| ||| |||||||| ||||| ||| |||| ||||||| ||||||| ||||||||||| || || ||||| | ||| | |
|
|
| T |
4568172 |
tttttcctttctgtcccaccattaattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaacttattaca |
4568271 |
T |
|
| Q |
443 |
gatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatg |
541 |
Q |
| |
|
||||| ||| |||| ||||||||| || | ||||| |||||||| ||||||||||||| ||||| |||||||| | || ||||||||||| ||||| |
|
|
| T |
4568272 |
aatatatctg-cagtatgttggctgctcagaaaaaaaaggccaacataacattggtactctggcacaaatgctttccaatgtggagttccatccacaatg |
4568370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 233 - 542
Target Start/End: Original strand, 4469809 - 4470118
Alignment:
| Q |
233 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
332 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||| |||||||| || | ||| ||||| | |||||| |||||||||| ||||||||| |||| |
|
|
| T |
4469809 |
tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt |
4469908 |
T |
|
| Q |
333 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
432 |
Q |
| |
|
| |||||||||| |||| || ||||| |||||||||||||| || ||| |||| |||||| |||||| |||| ||||| | ||| |||||| |
|
|
| T |
4469909 |
tccctcatcttctttccattctctccaaccatcaattcattgactagcttctccacctcatctctcttcacatctttatcgatttcaagtccaatctccc |
4470008 |
T |
|
| Q |
433 |
atatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttcca |
532 |
Q |
| |
|
|| || | | ||| | ||| |||| | ||||||| | || |||||||||||||||||||| ||||| || |||||||||||| ||||||||||||| |
|
|
| T |
4470009 |
attcattgcaaataaatctacaatttgctagctgatcaccaaagaatggccaacacaacattggcactccagcgcatatgctttcagtggttgagttcca |
4470108 |
T |
|
| Q |
533 |
tccgcaatga |
542 |
Q |
| |
|
|||||||||| |
|
|
| T |
4470109 |
tccgcaatga |
4470118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 4461126 - 4461438
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||||| |||||||| || | ||| ||||| | |||||| |||||||||| || |||||| || |
|
|
| T |
4461126 |
ttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatgacc |
4461225 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
||||||||||||||| |||| | ||||| ||||||||| |||| || ||| |||| || ||| |||||| |||| ||||| | ||| ||| |
|
|
| T |
4461226 |
ttttgcctcatcttctttccaatctctccaaccatcaattcgttgaccaacttctccacctcatccctcttcacatctttatcgatttcaagtccaatct |
4461325 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
||||| | | | | ||| | |||||||| ||||||||| | || ||||||||||||||||| || ||||| ||||||||||||||| ||||||| || |
|
|
| T |
4461326 |
cccatttgttgcaaataaatctacagtttgctggctgatcaccaaagaatggccaacacaacatcggcactccagcacatatgctttcagtggttgaatt |
4461425 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
4461426 |
ccatccacaatga |
4461438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 230 - 358
Target Start/End: Original strand, 4492958 - 4493086
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgagg-actggtgttctcctctgccttcttcttcaactccatggc |
328 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||| ||| ||| |||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
4492958 |
ttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtact-gtgtcctcctctgccttctttttcaactccgtggc |
4493056 |
T |
|
| Q |
329 |
cttttgcctcatcttcattcctttatctcc |
358 |
Q |
| |
|
||| ||||||||| ||||||| ||||| |
|
|
| T |
4493057 |
ttttctcctcatcttgtttcctttctctcc |
4493086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 4392154 - 4392052
Alignment:
| Q |
231 |
tgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcct |
330 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||| ||||| | |||| ||| | |||| ||||| |||||||||||||||||| || |||| |
|
|
| T |
4392154 |
tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcct |
4392055 |
T |
|
| Q |
331 |
ttt |
333 |
Q |
| |
|
||| |
|
|
| T |
4392054 |
ttt |
4392052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 542
Target Start/End: Original strand, 4493180 - 4493270
Alignment:
| Q |
452 |
acagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||| ||| | |||||||||||||| |||||| |
|
|
| T |
4493180 |
acagtttgttggctgatcactaaagaaaggccaacacaacattggcactccggcacatatgtttttggtagttgagttccatccacaatga |
4493270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 542
Target Start/End: Original strand, 4457844 - 4457909
Alignment:
| Q |
477 |
aatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
|||||||||| || |||||| ||||| || |||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
4457844 |
aatggccaacgcagcattggcactccagcgcatatgctttcagtggttgagtttcatccacaatga |
4457909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 4457644 - 4457688
Alignment:
| Q |
236 |
aagcatgacctccttaatcactttgtccaagttcatgtatgaaca |
280 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
4457644 |
aagcatgacttccttagtcactttgtccaagttcaagtatgaaca |
4457688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 4607020 - 4606972
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaa |
278 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
4607020 |
ttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaa |
4606972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 535
Target Start/End: Complemental strand, 4299673 - 4299645
Alignment:
| Q |
507 |
catatgctttcaatggttgagttccatcc |
535 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4299673 |
catatgctttcaatggttgagttccatcc |
4299645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 230 - 538
Target Start/End: Original strand, 1674229 - 1674537
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1674229 |
ttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggcc |
1674328 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||||||||||||| |||| || ||||| ||||||||||||||| || ||| | ||||||| ||||||| |||||||||||||||||| ||| |
|
|
| T |
1674329 |
ttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaaccctctctcttcacattcgtatcaatttccataccaatct |
1674428 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
|||| || | ||| | |||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||| |||||||||| |
|
|
| T |
1674429 |
tccattcattacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaacattggcactccagcgcatatgctttcagtggttgagtt |
1674528 |
T |
|
| Q |
530 |
ccatccgca |
538 |
Q |
| |
|
||||||||| |
|
|
| T |
1674529 |
ccatccgca |
1674537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 230 - 542
Target Start/End: Complemental strand, 20863972 - 20863660
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||| || || || |||| |||||||||||||||||||||||| | | | |
|
|
| T |
20863972 |
ttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactcatttgtc |
20863873 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||||||||||| || ||||||| ||||| |||||||||||| | ||| || |||| ||||||| | ||||| || |||||||| || ||| ||| |
|
|
| T |
20863872 |
ttttgcctcatcctccttcctttctctcccaccatcaattcatttaccagcatctccacctcctctctcttgacattggtgtcaatttcgatcccaatct |
20863773 |
T |
|
| Q |
430 |
cccatatataggagatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
||||| | | | | || || ||| |||||||| |||||||| || ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
20863772 |
cccatttgttgcaaatgtatctg-cagtttgtcggctgatcagcaaaaaatggccagcacaacattggcactccagcacatatgctctcaatggttgagt |
20863674 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
20863673 |
tccatccacaatga |
20863660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 230 - 542
Target Start/End: Complemental strand, 16686396 - 16686084
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||||||||||||||||| |||| ||| || | || || || ||||| | | || || || | |
|
|
| T |
16686396 |
ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttcatttgcagttcaattatc |
16686297 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||| |||||||||| ||||||| ||||| |||||||||||||| || ||| |||| |||||| ||||||| || ||||||||||| ||| ||| |
|
|
| T |
16686296 |
tttttcctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatct |
16686197 |
T |
|
| Q |
430 |
cccatatataggagatata-ctgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagt |
528 |
Q |
| |
|
||||| || | | ||||| ||| || |||| ||||||||| || ||||||||||||||||||||||| ||||| ||| |||| |||||| ||||||||| |
|
|
| T |
16686196 |
cccattcattgcaaatatatctg-cattttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcatatatactttcagtggttgagt |
16686098 |
T |
|
| Q |
529 |
tccatccgcaatga |
542 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
16686097 |
tccatccacaatga |
16686084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 233 - 542
Target Start/End: Original strand, 3086426 - 3086735
Alignment:
| Q |
233 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttt |
332 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||| ||||| | | ||| |
|
|
| T |
3086426 |
tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattt |
3086525 |
T |
|
| Q |
333 |
tgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctccc |
432 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||| ||| |||| ||||||| ||||||||||||| ||||| || ||| |||||| |
|
|
| T |
3086526 |
tgcctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctccc |
3086625 |
T |
|
| Q |
433 |
atatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttcca |
532 |
Q |
| |
|
|||||| | ||||||| ||||||| |||| ||||| | |||||||||||||||||||||| ||||| ||| || |||||||| ||||||||||| |
|
|
| T |
3086626 |
atatattgcagatatatctacagtttattggttgatctccataaaatggccaacacaacattggcactccagcaagtacgctttcaaccgttgagttcca |
3086725 |
T |
|
| Q |
533 |
tccgcaatga |
542 |
Q |
| |
|
||| |||||| |
|
|
| T |
3086726 |
tccacaatga |
3086735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 205 - 542
Target Start/End: Original strand, 24102977 - 24103314
Alignment:
| Q |
205 |
tagaataaatcactttagtctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctc |
304 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| || || |||||||| || |
|
|
| T |
24102977 |
tagaataaatgactttaatctagaattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttc |
24103076 |
T |
|
| Q |
305 |
tgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcaca |
404 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| ||||| || |||| || ||||| |||||||||||||| | ||| || | |||||| ||||| |
|
|
| T |
24103077 |
tgccttcttcttgaactccaagaccttttgcttcatcgtctttccgttctctcccaccatcaattcattgactaacttctcgacgtcatctctcttcaca |
24103176 |
T |
|
| Q |
405 |
ttagtatcaatttccataccagtctcccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctg |
504 |
Q |
| |
|
|| ||||| ||||| | ||| |||||||| |||| | ||| | |||||||||||| ||||| | || |||||||||||||||||||| ||||| | |
|
|
| T |
24103177 |
tttgtatcgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttggttgatcaccaaagaatggccaacacaacattggcactccag |
24103276 |
T |
|
| Q |
505 |
cacatatgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24103277 |
cacatatgctttcagtggttgagttccatccgcaatga |
24103314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 246 - 538
Target Start/End: Complemental strand, 28000212 - 27999920
Alignment:
| Q |
246 |
tccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28000212 |
tccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatctttt |
28000113 |
T |
|
| Q |
346 |
ttcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtctcccatatataggagat |
445 |
Q |
| |
|
|||| || ||||| ||||||||||||||| || ||| | | |||| || ||||||| ||||||||||||||||| ||| |||| || | || |
|
|
| T |
28000112 |
ttccattctctcccaccatcaattcattgataagcttctccaaatcctctatcttcacattcatatcaatttccataccaatcttccattcattacaaat |
28000013 |
T |
|
| Q |
446 |
atactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgca |
538 |
Q |
| |
|
| | |||||||||||||||||| || ||||||| ||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
28000012 |
aaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggcactccagcgcatatgctttcggtggttgagttccatccgca |
27999920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 24109335 - 24109400
Alignment:
| Q |
83 |
aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaaat |
148 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
24109335 |
aaatcacataataagtcatacttatatggcttacattttaaatataaccagcacctcacactaaat |
24109400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 24102888 - 24102955
Alignment:
| Q |
83 |
aaatgacataataaatcacacttatatggcttacattttatatatgtttagcacctcacactaaatgc |
150 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| |||||||||| ||| |||||||||||||||||||| |
|
|
| T |
24102888 |
aaatcacataataagtcatacttatatggtttacattttaaatagaactagcacctcacactaaatgc |
24102955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 1281117 - 1281429
Alignment:
| Q |
230 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatggcc |
329 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||||||||||||||| |||| || || ||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
1281117 |
ttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggcc |
1281216 |
T |
|
| Q |
330 |
ttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagtct |
429 |
Q |
| |
|
|||| ||||| ||| |||||| ||| || | |||||||||||||||| || | |||| ||||||| ||||||| ||||| |||||||||||| ||| |
|
|
| T |
1281217 |
ttttctctcatattctttccttcatccccggctatcaattcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccataccaatct |
1281316 |
T |
|
| Q |
430 |
cccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagtt |
529 |
Q |
| |
|
|||| || | ||| | ||||| |||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
1281317 |
tccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgagtt |
1281416 |
T |
|
| Q |
530 |
ccatccgcaatga |
542 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1281417 |
ccatccgcaatga |
1281429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 228 - 542
Target Start/End: Complemental strand, 3850 - 3536
Alignment:
| Q |
228 |
cattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccacgaggactggtgttctcctctgccttcttcttcaactccatgg |
327 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||| || || ||||||||||||||||||||||| ||||||| || |
|
|
| T |
3850 |
cattgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacgg |
3751 |
T |
|
| Q |
328 |
ccttttgcctcatcttcattcctttatctcctgacatcaattcattgatcagattcgttaccttctctctcgtcacattagtatcaatttccataccagt |
427 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| | |||||||||||| || ||| |||| |||||| |||||| |||| ||||| | ||| | |
|
|
| T |
3750 |
ccttttgcctcatcttctttcctttctctcccaccgtcaattcattgactagcttctccacctcatctctcttcacatccatatcgatttcaagtccaat |
3651 |
T |
|
| Q |
428 |
ctcccatatataggagatatactgacagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgag |
527 |
Q |
| |
|
||||||| | | | ||| | |||||||||||||||||| | || ||||||||||| | |||||||||||| || |||||||||||| ||||||| |
|
|
| T |
3650 |
ctcccattcgttgcaaataaatctacagtttgttggctgatcaccaaagaatggccaacaaagcattggtactccagcgcatatgctttcagtggttgaa |
3551 |
T |
|
| Q |
528 |
ttccatccgcaatga |
542 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
3550 |
ttccatccacaatga |
3536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 542
Target Start/End: Complemental strand, 3591 - 3501
Alignment:
| Q |
452 |
acagtttgttggctgatcggcgaaaaatggccaacacaacattggtactcctgcacatatgctttcaatggttgagttccatccgcaatga |
542 |
Q |
| |
|
||||||||||| || |||| |||||||||||||| || |||||| ||||| | ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
3591 |
acagtttgttgagtgttcggggaaaaatggccaacgcagcattggaactccagaacaaatgctttcaatggttgagttccatccacaatga |
3501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University