View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17987_low_13 (Length: 236)
Name: NF17987_low_13
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32466293 - 32466515
Alignment:
| Q |
1 |
attcttatagccaatgatgtggtgggcgaggcccgtaagttaaagaaggatttgttgttgtttaaagcgaattttgaaaaaacatatgatctattaattg |
100 |
Q |
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| T |
32466293 |
attcttatagccaatgatgtggtgagcgaggcccgtaagtgaaagaaggatttgttgttgtttaaagcgaattttgaaaaaacatatgatctattaattg |
32466392 |
T |
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| Q |
101 |
ggggtatttggatgttgttatag-aaaatgatgtttccaatgctttggaggaaatggatgaaggagtgttatgttactgctacaatttctgttttggtaa |
199 |
Q |
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| T |
32466393 |
ggggtatttggatgttgttatagaaaaatgatgtttccaacgctttggaggaaatggatgaaggagtgttatgttactgctacaatttatgttttggtaa |
32466492 |
T |
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| Q |
200 |
atggaagttccagtgaagaattt |
222 |
Q |
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| T |
32466493 |
atggaagttccagtgaagaattt |
32466515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17604879 - 17604958
Alignment:
| Q |
1 |
attcttatagccaatgatgtggtgggcgaggcccgtaagttaaagaaggatttgttgttgtttaaagcgaattttgaaaa |
80 |
Q |
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| T |
17604879 |
attctgatagccaatgaggtggttgatgaggctcgtaagtctaagaaagatatgttgttgtttaaagtggattttgaaaa |
17604958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 30165910 - 30165982
Alignment:
| Q |
43 |
aagaaggatttgttgttgtttaaagcgaattttgaaaaaacatatga-tctattaattgggggtatttggatg |
114 |
Q |
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| T |
30165910 |
aagaaggatcttttgttgtttaaggtcgattttgaaaaagcatatgattctattgattggggttatttggatg |
30165982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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