View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17987_low_3 (Length: 460)
Name: NF17987_low_3
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 31349222 - 31348950
Alignment:
| Q |
1 |
actatttcttttcatcctttgctttactacaaaaggttcaatttattggtggaatattcatgcatgctacctataacaattttcttgctatactttgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31349222 |
actatttcttttcatcctttgctttactacaaaaggttcaatttattggtggaatattcatgcatgctacctataacaatttccttgctatactttgtgt |
31349123 |
T |
|
| Q |
101 |
gcacacatttcatcttttgataaataagatgatnnnnnnngttggaaaaggataacaatgtgagaaagtacaacataaaagatcttattcaaggggtctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
31349122 |
gcacacatttcatcttttgataaataagatgat-aaaaaagttggaaaaggataacaatgtgagaaagtacaacatagaagatcttattcaaggggtttg |
31349024 |
T |
|
| Q |
201 |
ttttagaagtgaaaatgaaccaatcaagcttatttttatatatttttgaattatatgtttaattcactataagt |
274 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31349023 |
ttttagaagtgaaaatgaaccaatgaagcttatttttatatatttttgaattatatgtttaattcactttaagt |
31348950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 319 - 447
Target Start/End: Complemental strand, 31348867 - 31348739
Alignment:
| Q |
319 |
aatacattaatgactttattgtgtggatgttgatcttgatttcatcctttccactaaacctacttcaactgctctagaatttacaaattttgattttagt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31348867 |
aatacattaatgactttattgtgtggatgttgatcttgatttcatcctttccactaaacctacttcaactgctctagaattgacaaattttgattttagt |
31348768 |
T |
|
| Q |
419 |
ttgtataaatgtatgtttggtttgacttc |
447 |
Q |
| |
|
||||||||||| |||||| |||||||||| |
|
|
| T |
31348767 |
ttgtataaatgcatgttttgtttgacttc |
31348739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 31348898 - 31348866
Alignment:
| Q |
141 |
gttggaaaaggataacaatgtgagaaagtacaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31348898 |
gttggaaaaggataacaatgtgagaaagtacaa |
31348866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University