View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17987_low_6 (Length: 429)
Name: NF17987_low_6
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 32687889 - 32688303
Alignment:
| Q |
13 |
aaaatctgattagattacatatacttctttttagtaaaaatgattaattgcgtgaactaatacactgggttaaaacccataatattgttgacctccagta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32687889 |
aaaatctgattagattacatatacttctttttagtaaaaatgattacttgcgtgaactaatacactgggttaaaacccataatattgttgacctccagta |
32687988 |
T |
|
| Q |
113 |
aattttatggatgtattagattgacggcttaattgcacatctccacgttggagctggttgagagtaagattgccaaggttcaacttttctgtatcgtctt |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
32687989 |
aattttatggatgtactagattgacggcttaattgcacatttccacgttggagctggttgagagcaagattgccaagtttcaacttttctgtatcgtctt |
32688088 |
T |
|
| Q |
213 |
ggttcactgatcgcatatgtttggggatagttgatggtggcggaacgtagacgagtgtttcaaatttcaatttcagctttatggggtcttgatagaatgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688089 |
ggttcactgatcgcatatgtttggggatagttgatggtggcggaacgtagacgagtgtttcaaatttcaatttcagctttatggggtcttgatagaatgt |
32688188 |
T |
|
| Q |
313 |
gttattctataaagnnnnnnnnnncttttcaattgtgggtctaggtatttttcacattttggtcatgttgtgggagagtcaaagatttctgatttttctt |
412 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688189 |
gttattctataaag-tttttttttcttttcaattgtgggtctaggtatttttcacattttggtcatgttgtgggagagtcaaagatttctgatttttctt |
32688287 |
T |
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| Q |
413 |
tcttttggtggtgatg |
428 |
Q |
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|||||||||||||||| |
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| T |
32688288 |
tcttttggtggtgatg |
32688303 |
T |
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