View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17987_low_7 (Length: 326)
Name: NF17987_low_7
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 24811438 - 24811158
Alignment:
| Q |
1 |
aacaagattatagaggtccagagacaaaatggtcctccaacagaaggtaataatggtgtacttggaagactaatagaggaagatagtttgccagatgatg |
100 |
Q |
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| T |
24811438 |
aacaagatcatagaggtccagagacaaaatggtcctccaaaagaaggtaataatggtgtacttggaagactaatagaggaagatagtttgccagatgatg |
24811339 |
T |
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| Q |
101 |
ctgttgcagacttcatcatcaatcttctttttgctggcaatgaaactaccacaaaaacaatgctttttgcagtctatttcctaactcaatgtcctaatgc |
200 |
Q |
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| T |
24811338 |
ctgttgcagacttcatcatcaatcttctttttgctggcaatgaaactaccacaaaaacaatgctttttgcagtctattttctaactcaatgtcctaatgc |
24811239 |
T |
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| Q |
201 |
catggagcagcttctggtatgtatcatagttaagcaacttaattaagtgcttatgtataataaattcaaactgtttttata |
281 |
Q |
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| T |
24811238 |
catggagcagcttctggtatgtatcatagttaagcaacttaattaagtgcttatgtataataaattcaaactgtttttata |
24811158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 24811144 - 24811107
Alignment:
| Q |
272 |
tgtttttataagctaccttgtagagattatggaaatat |
309 |
Q |
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| T |
24811144 |
tgtttttataagctaccttgtagagcttatggaaatat |
24811107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 8187520 - 8187480
Alignment:
| Q |
268 |
aaactgtttttataagctaccttgtagagattatggaaata |
308 |
Q |
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| T |
8187520 |
aaactgttttcataagctaccatggagagattatggaaata |
8187480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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