View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17987_low_8 (Length: 322)
Name: NF17987_low_8
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 45671529 - 45671848
Alignment:
| Q |
1 |
ttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacatttgtaagctcgtggacaa |
100 |
Q |
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| T |
45671529 |
ttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacatttgtaagctcgtggacaa |
45671628 |
T |
|
| Q |
101 |
tgcagtgtctggcacataaatgagcaaccagaacatatttgagttaatcaattggctg----aagttagtatttcttaccctttgaacgagtcgcagggc |
196 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
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| T |
45671629 |
tgcagtgtctggcacataaatgagcaaccagaacagatttgagttaatcaattggctgaaacaagttagtatttcttacccgttgaacgagccgcagggc |
45671728 |
T |
|
| Q |
197 |
agcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagttcaacagcactggcagcc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45671729 |
agcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagttcaacagcactggcagcc |
45671828 |
T |
|
| Q |
297 |
atgacatgatgatgtccatc |
316 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
45671829 |
atgacatgatgatgaccatc |
45671848 |
T |
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