View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17987_low_9 (Length: 263)
Name: NF17987_low_9
Description: NF17987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17987_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2473653 - 2473884
Alignment:
| Q |
1 |
tgtacccctttctttaaccaccatcatcagtaatgtgatagactccattttgcaactaaattttttag--------aaatctaaaatattgtgaatgtca |
92 |
Q |
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| T |
2473653 |
tgtacccctttctttaaccaacatca---gtaatgtgatagcctccattttgcaactaaattttttagccaagttaaaatctaaaatattgtgaatgtca |
2473749 |
T |
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| Q |
93 |
ccacagtcaaccaactcattcccatatagtgcttttactatctcagttactgagacttcttcctcataatcaacaaaaatacaactaagattaaaacact |
192 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2473750 |
ccacagtcaactaactcattcccatatagtgcttttacaatctcagttactgaaacttcttcctcataatcaacaaaaatacaactaagattaaaacagt |
2473849 |
T |
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| Q |
193 |
tagtgtcaagagagtaaaccacataaatcctaacc |
227 |
Q |
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| T |
2473850 |
tggtgtcaagagagtaaaccacataaatcctaacc |
2473884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 39625574 - 39625501
Alignment:
| Q |
154 |
cctcataatcaacaaaaatacaactaagattaaaacacttagtgtcaagagagtaaaccacataaatcctaacc |
227 |
Q |
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|||||||| |||||| || | ||||| |||||||| |||| || ||||||| | ||||||||||||||||||| |
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| T |
39625574 |
cctcataagcaacaagaagaaaactatgattaaaagacttgatggcaagagaattaaccacataaatcctaacc |
39625501 |
T |
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