View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17988_high_12 (Length: 324)
Name: NF17988_high_12
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_high_12 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31662213 - 31662525
Alignment:
| Q |
1 |
aacggattacggggaatgaaatatgccgcttaaagtttttacggtannnnnnnnatcagataaattaagttaa----acttaaaaggggtaaaatggtca |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||| |
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| T |
31662213 |
aacggattacggggaatgaaatatgccgcttaaagtttttacggtattttttttatcatataaattaagttaagaagacctaaaaggggtaaaatggtca |
31662312 |
T |
|
| Q |
97 |
tttcccctaagtgggg-tatatataagacaa--tatccaaaaaagtttccacacttttctaccacattctctcacccaaaaatcatatttttcttcctcc |
193 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662313 |
tttcccctaagtgggggtatatataagacaaaatatccaaaaaagtttccacacttttctaccacattctctcacccaaaaatcatatttttcttcctcc |
31662412 |
T |
|
| Q |
194 |
ttttcctaacctgcacgttatctccctctttctcatgctatccaccaaaaatcaacacttcaccatggaatcatcatgcttatgtgttttgcttgagtta |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662413 |
ttttcctaacctgcacgttatctccctctttctcatgctatccaccaaaaatcatcacttcaccatggaatcatcatgcttatgtgttttgcttgagtta |
31662512 |
T |
|
| Q |
294 |
tggaagaagtaga |
306 |
Q |
| |
|
||||||||||||| |
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|
| T |
31662513 |
tggaagaagtaga |
31662525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31330092 - 31330401
Alignment:
| Q |
1 |
aacggattacggggaatgaaatatgccgcttaaagtttttacggtannnnnnnnatcagataaattaagttaa----acttaaaaggggtaaaatggtca |
96 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || || ||||||||||||||||| |
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| T |
31330092 |
aacggattacggagaatgaaatatgccgcttaaagtttttacagtattttttttatcagataaattaagttaagaagacctagaaggggtaaaatggtca |
31330191 |
T |
|
| Q |
97 |
tttcccctaagtggggtatatataagacaa--tatccaaaaaagtttccacacttttctaccacattctctcacccaaaaatcatatttttcttcctcct |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
31330192 |
tttcccataagtggggtatatataagacaaaatatccaaaaaagtttccacacttttctaccacattctctcacccaaaa-tcagatttttcttcctcct |
31330290 |
T |
|
| Q |
195 |
tttcctaacctgcacgttatctccctctttctcatgctatccaccaaaaatcaacacttcaccatggaatcatcatgcttatgtgttttgcttgagttat |
294 |
Q |
| |
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| ||||||| | |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31330291 |
tctcctaacat-cacgctatctccctctttctcatgctatccaccaaaaatcagcacttcaccatggaatcatcatgcttatgtgttttgcttgagttat |
31330389 |
T |
|
| Q |
295 |
ggaagaagtaga |
306 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31330390 |
ggaagaagtaga |
31330401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31336813 - 31337122
Alignment:
| Q |
1 |
aacggattacggggaatgaaatatgccgcttaaagtttttacggtannnnnnnnatcagataaattaagttaa----acttaaaaggggtaaaatggtca |
96 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || || ||||||||||||||||| |
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|
| T |
31336813 |
aacggattacggagaatgaaatatgccgcttaaagtttttacagtattttttttatcagataaattaagttaagaagacctagaaggggtaaaatggtca |
31336912 |
T |
|
| Q |
97 |
tttcccctaagtggggtatatataagacaa--tatccaaaaaagtttccacacttttctaccacattctctcacccaaaaatcatatttttcttcctcct |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
31336913 |
tttcccataagtggggtatatataagacaaaatatccaaaaaagtttccacacttttctaccacattctctcacccaaaa-tcagatttttcttcctcct |
31337011 |
T |
|
| Q |
195 |
tttcctaacctgcacgttatctccctctttctcatgctatccaccaaaaatcaacacttcaccatggaatcatcatgcttatgtgttttgcttgagttat |
294 |
Q |
| |
|
| ||||||| | |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31337012 |
tctcctaacat-cacgctatctccctctttctcatgctatccaccaaaaatcagcacttcaccatggaatcatcatgcttatgtgttttgcttgagttat |
31337110 |
T |
|
| Q |
295 |
ggaagaagtaga |
306 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31337111 |
ggaagaagtaga |
31337122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 31316787 - 31316588
Alignment:
| Q |
1 |
aacggattacggggaatgaaatatgccgcttaaagtttttacggtannnnnnnnatcagataaattaagttaa----acttaaaaggggtaaaatggtca |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31316787 |
aacggattacggggaatgaaatatgccgcttaaagttttgacggtattttttttatcagataaattaagttaagaagaccaaaaaggggtaaaatggtca |
31316688 |
T |
|
| Q |
97 |
tttcccctaagtggggtatatataagac--aatatccaaa--aaagtttccacacttttctaccacattctctcacccaaaaatcatatttttcttcctc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
31316687 |
tttcccctaagtggggtatatataagacaaaatatccaaaataaagtttccacacttttctaccccattctctcacccaaatcagatatttttcttcctc |
31316588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 18113235 - 18113057
Alignment:
| Q |
1 |
aacggattacggggaatgaaatatgccgcttaaagtttttacggtannnnnnnnatcagataaattaagttaa----acttaaaaggggtaaaatggtca |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||| ||||||||||| |
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|
| T |
18113235 |
aacggattacggggaatgaaatatgccgcttaaagtttttaccgtattttttt-atcagataaattaagttaagaagaccaaaaaggg-taaaatggtca |
18113138 |
T |
|
| Q |
97 |
tttcccctaagtggggtatatataagac--aatatcc--aaaaaagtttccacacttttctaccacattctctcacccaaa |
173 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18113137 |
ttttccctaagtggggtatatataagacaaaatatacaaaaaaaagtttccacacttttctaccacattctcttacccaaa |
18113057 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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