View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_high_14 (Length: 309)
Name: NF17988_high_14
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 12430991 - 12431253
Alignment:
| Q |
19 |
actaaatggttattgacatctgttgctttaaactgcatttgattagtattttgtcattatgttatcttctatattttgatgaatcagccaaaattactgg |
118 |
Q |
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| T |
12430991 |
actaaatggttattgacttctattgctttaaactgcatttgattagtattttgtcattatgttatcttctatgtttttgtgaatcagccaaaattactgg |
12431090 |
T |
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| Q |
119 |
ttaacttttaatcagcttgccactatttgtttcacatgaaataactacctgcttatttggcttgtaactatttggtattattttcatttttggcttgagc |
218 |
Q |
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| T |
12431091 |
ttaatttttaatcagcttgccactatctgtttcacatgaaataactacctgcttatttggcttgtaactacttggtattattttcatttttggcttgagc |
12431190 |
T |
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| Q |
219 |
tcgtaaatgcttgaatgttatgaccctgactttgtttttcaaaatacttttccctaataaaatcttgcat |
288 |
Q |
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| T |
12431191 |
tcataaatgcttgaattt-------ctgacttgttttttcgaaatacttttccctaataaaatcttgcat |
12431253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 12412715 - 12412922
Alignment:
| Q |
38 |
ctgttgctttaaactgcatttga-ttagtattttgtcattatgttatctt-ctatattttgatgaatcagccaaaattactggtta----acttttaatc |
131 |
Q |
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| T |
12412715 |
ctgttgctttaaacttcatttgatttggtattttgtcattatcttattttaatatatttt-atgaatcagccaaagttgtttgttaattcacttctaatc |
12412813 |
T |
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| Q |
132 |
agcttgccactatttgtttcacatgaaat------aactacctgcttatttggcttgtaactatttggtattattttcatttttggcttgagctcgtaaa |
225 |
Q |
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| T |
12412814 |
aaattgccattatttgtttcacatgaaatgaaataaactacctgcttatttggcttgtaactgcttgg---ctttttcatcgttggattgagctcgtaaa |
12412910 |
T |
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| Q |
226 |
tgcttgaatgtt |
237 |
Q |
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| T |
12412911 |
tgcttgattgtt |
12412922 |
T |
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