View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_high_15 (Length: 290)
Name: NF17988_high_15
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 44305655 - 44305929
Alignment:
| Q |
12 |
agcaaaggctatgtcaccaagagcttggaaaattccccacacttttgttgttgttgacacattttcagtgcttcctccggtgagagtacccttgaaggta |
111 |
Q |
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| T |
44305655 |
agcaaaggctatgtcaccaagagcttggaaaattccccacacttctgttgttgttgacacattttcagtgcttcctccagtgagagtacccttgaaggta |
44305754 |
T |
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| Q |
112 |
ccattttctgtttaaaaatcagttagcaaaacaaaaagtataatccccgagttaaatatg--------nnnnnnnnngtgttaacagtctagnnnnnnng |
203 |
Q |
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| T |
44305755 |
ccattttctgtttaaaaatcagttagcaaaacaaaaagtataatccccgagttaaatatgttttttattttatttttgtgttaacagtctag-ttttttg |
44305853 |
T |
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| Q |
204 |
gggaaaggactctagtagtcctgagttcgttcgagttaccataaattacatgatcaagaattattacatccagcag |
279 |
Q |
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| T |
44305854 |
gggaaaggactctagtagtcctgagttcgttcgagttaccgtaaagtaaatgatcaagaattattacatccagcag |
44305929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 44315406 - 44315516
Alignment:
| Q |
13 |
gcaaaggctatgtcaccaagagcttggaaaattccccacacttttgttgttgttgacacattttcagtgcttcctccggtgagagtacccttgaaggtac |
112 |
Q |
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||||||||||||| ||||||||||||||| ||||||| |||||| | | ||| |||| || || ||||| |||| ||||| |||||||||||| || |
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| T |
44315406 |
gcaaaggctatgttgccaagagcttggaaagttccccatactttttgggcttttgtcacagttccaatgcttactcctgtgaggctacccttgaaggaac |
44315505 |
T |
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| Q |
113 |
cattttctgtt |
123 |
Q |
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| T |
44315506 |
cattttctgtt |
44315516 |
T |
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