View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_high_16 (Length: 282)
Name: NF17988_high_16
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 40553437 - 40553175
Alignment:
| Q |
1 |
cagaaaaggatgcatgattcaccttgaaatgttggtgttctcgagcagttctacaagcttatcagattggctaaaatgaactatcttgtaaataacagaa |
100 |
Q |
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| T |
40553437 |
cagaaaaggatgcatgattcaccttgaaatgttggtgttctcgagcagttctacaagcttatcagattggctaaaatgaactatcttgtaaataacagaa |
40553338 |
T |
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| Q |
101 |
aggcatccatgacaaacatatgtatttggatctgaattaaccacctgtcaagggtgaagtacaaaataaaatgtagcnnnnnnnnnnnnnnnnnnagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
40553337 |
aggcatccatgacaaacatatgtatttggatctgaattaaccacctgtcaagggtgaagtacaaattaaaatgtagctttttattttttatttttagaaa |
40553238 |
T |
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| Q |
201 |
aggtctgcgacaacaattcatattgcaatatcaaggtttttgatgtctcagcgactctaattg |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40553237 |
aggtctgcgacaacaattcatattgcaatatcaaggtttttgatgtctcagcgactttaattg |
40553175 |
T |
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