View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17988_high_2 (Length: 618)
Name: NF17988_high_2
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 16 - 600
Target Start/End: Complemental strand, 3647395 - 3646811
Alignment:
| Q |
16 |
atatacgaggataaaatgccattatagatccatattgcagctagacaaggtagaaggcaagtccactgcatccaaatcatacataaacatgtatagaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3647395 |
atatacgaggataaaatgccattatagatccatattgcagctagacaaggtagaaggcaagtccactgcatccaaatcatacataaacatgtatagaatt |
3647296 |
T |
|
| Q |
116 |
tttcaataaatgttcataaagaaaagaaattgaacatttcaccagaactcataacaaaggttttaaattacggccacgatagagtcggagacacattaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3647295 |
tttcaataaatgttcataaagaaaagaaattgaacatttcaccagaactcataacaaaggttttaaattacggccacgatagagtcggagacacattaaa |
3647196 |
T |
|
| Q |
216 |
aatctttgatgctgcggcttagatctctatcgtggaccattttttaaaagcatgcataacatgtcactcattgagagcactttaaaatcatttgtaggtt |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3647195 |
aatctttgatgttgcggcttagatctctatcgtggaccattttttaaaagcatgcataacatgtcacttattgagagcactttaaaatcatttgtaggtt |
3647096 |
T |
|
| Q |
316 |
tgtacctgagaccagatagaccaaagtccagttctaatagctgacatatgatactctagaacaggatataaaactgttgcagctattccgattacagcgc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3647095 |
tgtacctgagaccagatagaccaaagtccagttctaatagctgacatatgatactctagaacaggatataaaactgttgcagctattccgattgcagcgc |
3646996 |
T |
|
| Q |
416 |
ttattcctcgtgctattccaataacatatgcaggtataccttcccattctaaagtagctgtcatcaaagttccaaagctgaaacaagtaattgaaacttt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3646995 |
ttattcctcgtgctattccaataacatatgcaggtataccttcccattctaaagtagctgtcatcaaagttccaaagctgaaacaagtaattgaaacttt |
3646896 |
T |
|
| Q |
516 |
atcagtgataattcattaccaatttacatcaaagaaatttaagacattttttcagaagttgtgttcatgaatagagtggagtgga |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3646895 |
atcagtgataattcattaccaatttacatcaaagaaatttaagacattttttcagaagttgtgttcatgaatagagtggagtgga |
3646811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 302 - 553
Target Start/End: Complemental strand, 3638242 - 3637990
Alignment:
| Q |
302 |
atcatttgtaggtttgtacctgagaccagatagaccaaagtccagttctaatagctgacatatgatactctagaacaggatataaaactgttgcagctat |
401 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
3638242 |
atcatttgtgagtttgtacctgagaccaaatagaccagagtccagttctaatagctgaaatctgatattgtagaacaggatataaaactgttgcagctat |
3638143 |
T |
|
| Q |
402 |
tccgattacagcgcttattcctcgtgctattccaataacatatgcaggtataccttcccattctaaagtagctgtcatcaaagttccaaagctgaaacaa |
501 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||| |
|
|
| T |
3638142 |
tccaattacagcgcttattcctcgtgctattccaataacatatgcaggtataccttcccattctaaagttgcagtcatcaatgttccaaagctgaagcaa |
3638043 |
T |
|
| Q |
502 |
gtaattgaaactttatcagtgataattcattaccaa-tttacatcaaagaaat |
553 |
Q |
| |
|
||||||| || |||||||||||| |||||| | || || ||||||||||||| |
|
|
| T |
3638042 |
gtaattggaattttatcagtgatgcttcattcctaacttaacatcaaagaaat |
3637990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 3638379 - 3638282
Alignment:
| Q |
13 |
aatatatacgaggataaaatgccattatagatccatattgcagctagacaaggtagaaggcaagtccactgcatccaaatcatacataaacatgtata |
110 |
Q |
| |
|
|||||||| || | |||||||||||| | |||||||| |||||||| ||| || || ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3638379 |
aatatatatgatgttaaaatgccattttggatccataatgcagctaaacatgggaggaggcaagtccactgcatccaaatcacacataaacatgtata |
3638282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University