View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_high_5 (Length: 440)
Name: NF17988_high_5
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 32745652 - 32745241
Alignment:
| Q |
15 |
aattggattagtgaaacaataccttcatgcattaataacatatcgtttcgaatggtggagtatgaaagtactgcaataggatcagcatcagttgagtatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32745652 |
aattggattagtgaaacaataccttcatgcattaataacatatcgtttcgaatggtggagtatgaaagtactgcaataggatcagcatcagttgagtatg |
32745553 |
T |
|
| Q |
115 |
atgatgactcaaaggataaaattcagtattatgaaaatactgcagtagcattcatttttcgaatggatgaaatttggttcgtcccgggaaataccttcca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32745552 |
atgatgactcaaaggataaaattcagtattatgaaaatactgcagtagcattcatttttcgaatggatgaaatttggttcgtcccgggaaataccttcca |
32745453 |
T |
|
| Q |
215 |
cattttctataactcctctttgagcttgaatcatcctagtgttgatagatacatgatatcttatgaaacaatagaagttgagttcagaacaaagagttat |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32745452 |
cattctctataactcctctttgagcttgaatcatcctagtgttgatacatacatgatatcttatgaaacaatagaagttgagtttagaacaaagagttat |
32745353 |
T |
|
| Q |
315 |
tatctctcttacaagggaaataacttgaacttaatgactggattggatttatcaagtaataatttgagtggtagcattccaccagagattggagaactaa |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32745352 |
tatctctcttacaagggaaataacttgaacttaatgactggattggatttatcaagtaattatttgagtggtagcattccaccagagattggagaactaa |
32745253 |
T |
|
| Q |
415 |
gagaaattattg |
426 |
Q |
| |
|
|||||||||||| |
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|
| T |
32745252 |
gagaaattattg |
32745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 423
Target Start/End: Complemental strand, 4912644 - 4912236
Alignment:
| Q |
15 |
aattggattagtgaaacaataccttcatgcattaataacatatcgtttcgaatggtggagtatgaaagtactgcaataggatcagcatcagttgagtatg |
114 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| || ||||| ||| |||||| |||| | ||| ||||||| ||||| | | |||| || ||| |
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|
| T |
4912644 |
aattggattaatgaaacaatacctccatgcattaagaatatatcatttaaaatggtagagtttcaaactactgcagtaggaggaagagcagtgcagaatg |
4912545 |
T |
|
| Q |
115 |
atgatgactcaaaggataaaattcagtattatgaaaatactgcagtagcattcatttttcgaatggatgaaatttggttcgtcccgggaaataccttcca |
214 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||| | ||| ||||||| | ||||||| ||||||||| ||| |||||||| ||| | |
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|
| T |
4912544 |
ataatgactcaaaggataaaattcagtattatggaaatactgcaacatcatacatttttttagtggatgatatttggttcacccctggaaatactttcga |
4912445 |
T |
|
| Q |
215 |
cattttctataactcctctttgagcttgaatcatcctagtgttgatagatacatgatatcttatgaaacaatagaagttgagttcagaacaaagagttat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
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|
| T |
4912444 |
cattttctataactcctctttgagcttgaaccatcctattgctgatgaatacatgatatcttatgaaatagtagaaattgagttcagaacaaagagttat |
4912345 |
T |
|
| Q |
315 |
tatctctcttacaagggaaataacttgaacttaatgactggattggatttatcaagtaataatttgagtggtagcattccaccagagattggagaactaa |
414 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |
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|
| T |
4912344 |
tatctctcttacaagggtaataacttgaacttaatgactggattggatttatcaagtaataatttgagtggtagtattcccccagagatcggagaactaa |
4912245 |
T |
|
| Q |
415 |
gagaaatta |
423 |
Q |
| |
|
|||| |||| |
|
|
| T |
4912244 |
gagatatta |
4912236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 321 - 426
Target Start/End: Complemental strand, 2125776 - 2125671
Alignment:
| Q |
321 |
tcttacaagggaaataacttgaacttaatgactggattggatttatcaagtaataatttgagtggtagcattccaccagagattggagaactaagagaaa |
420 |
Q |
| |
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||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
2125776 |
tcttacaagggaagtaacctggacttaatgactggattggatttatcaagtaataatttgagtggtagcattccagcagagatcggagaactacgagaaa |
2125677 |
T |
|
| Q |
421 |
ttattg |
426 |
Q |
| |
|
| |||| |
|
|
| T |
2125676 |
tcattg |
2125671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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