View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17988_high_9 (Length: 346)

Name: NF17988_high_9
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17988_high_9
NF17988_high_9
[»] chr6 (1 HSPs)
chr6 (49-340)||(886814-887106)
[»] scaffold0267 (1 HSPs)
scaffold0267 (132-206)||(10986-11060)
[»] chr7 (4 HSPs)
chr7 (130-200)||(38651295-38651365)
chr7 (87-206)||(29802741-29802860)
chr7 (132-206)||(32215580-32215654)
chr7 (131-198)||(43656127-43656193)
[»] chr2 (2 HSPs)
chr2 (132-206)||(39994675-39994749)
chr2 (126-206)||(3376131-3376211)
[»] chr4 (2 HSPs)
chr4 (130-198)||(52762930-52762998)
chr4 (126-206)||(17186266-17186347)
[»] chr8 (1 HSPs)
chr8 (131-206)||(21313795-21313872)
[»] chr5 (2 HSPs)
chr5 (133-206)||(38099573-38099646)
chr5 (126-206)||(37268329-37268410)
[»] scaffold0423 (1 HSPs)
scaffold0423 (131-206)||(10015-10091)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 49 - 340
Target Start/End: Complemental strand, 887106 - 886814
Alignment:
Q  49 ctgaaatttgcataagaagatatgatcttatagattcgtggtgctctcttggttaggcaccaatgacattgtagctgttgagtgattcatcactttaaca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  887106 ctgaaatttgcataagaagatatgatcttatagattcgtggtgctctcttggttaggcaccaatgacattgtagctgttgagtgattcatcactttaaca 887007  T
Q  149 taccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt-nnnnnnnnnncatttctcttatcaatttatgattatcaata 247  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||    
T  887006 taccttatacgggatgaatcattattgatttgaataatatattccattttgacttgttaaaaaaaaaaacatttctcttatcaatttatgattatcaata 886907  T
Q  248 cgtttgcggnnnnnnnnnntcaatttatcgatatgtacgttatagtcctatcatttgtttgttcgctcaactgaatgatataagaataatcta 340  Q
    |||||||||          |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  886906 cgtttgcggaaaaaaaaaatcaatttatcgatacgtacgttatagtcctatcatttgtttgttcgctcaactgaatgatataataataatcta 886814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 10986 - 11060
Alignment:
Q  132 gattcatcactttaacataccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt 206  Q
    ||||||||||||||||| ||||||| |||| ||||||| | |   ||||| |||||||||||||||||| |||||    
T  10986 gattcatcactttaacacaccttgtgcggggtgaatcactctctttttgagtaatatattccattttgatttgtt 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 38651295 - 38651365
Alignment:
Q  130 gtgattcatcactttaacataccttgtacgggatgaatcattattgatttgaataatatattccattttga 200  Q
    |||||||||||||||| |||||||| | |||| ||||||| |||   |||||| |||||||||||||||||    
T  38651295 gtgattcatcactttagcataccttatgcggggtgaatcactatgcttttgaacaatatattccattttga 38651365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 29802741 - 29802860
Alignment:
Q  87 tggtgctctcttggttaggcaccaatgacattgtagctgttgagtgattcatcactttaacatac-cttgtacgggatgaatcattattgatttgaataa 185  Q
    |||||| |||||| ||| ||||||||||| ||||| |||||| |||||||| |||||| |  ||| ||||| |||| | ||||| | ||| ||||| |||    
T  29802741 tggtgcactcttgattacgcaccaatgactttgtaactgttgtgtgattcaccactttta-gtacacttgtgcggggtaaatcacttttggtttgagtaa 29802839  T
Q  186 tatattccattttgacttgtt 206  Q
    ||||||| ||||| |||||||    
T  29802840 tatattcaattttaacttgtt 29802860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 32215654 - 32215580
Alignment:
Q  132 gattcatcactttaacataccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt 206  Q
    |||||||||||||| || ||||||| |||| ||||||| | |   ||||| |||||||||||||||||| |||||    
T  32215654 gattcatcactttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgtt 32215580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 43656127 - 43656193
Alignment:
Q  131 tgattcatcactttaacataccttgtacgggatgaatca-ttattgatttgaataatatattccatttt 198  Q
    ||||||||||||||| || ||||||| |||||||||||| ||| |  ||||| ||||||||||||||||    
T  43656127 tgattcatcactttagcacaccttgtgcgggatgaatcacttact--tttgagtaatatattccatttt 43656193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 39994675 - 39994749
Alignment:
Q  132 gattcatcactttaacataccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt 206  Q
    ||||||||| |||| || |||||||||||| ||||||| |||   ||||| |||||||||||||||||| |||||    
T  39994675 gattcatcattttagcacaccttgtacggggtgaatcactatatttttgagtaatatattccattttgatttgtt 39994749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 3376131 - 3376211
Alignment:
Q  126 ttgagtgattcatcactttaacataccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt 206  Q
    ||||||||||||||  |||| || ||||||| |||| ||||||| | ||  ||||| |||||||||| ||||||| |||||    
T  3376131 ttgagtgattcatcgttttagcacaccttgtgcggggtgaatcactcttcttttgagtaatatattctattttgatttgtt 3376211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 52762930 - 52762998
Alignment:
Q  130 gtgattcatcactttaacataccttgtacgggatgaatcattattgatttgaataatatattccatttt 198  Q
    ||||||||||||||||||| |||||||||| | ||||||| |||   |||||  |||||||||||||||    
T  52762930 gtgattcatcactttaacacaccttgtacgaggtgaatcactatacttttgagcaatatattccatttt 52762998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 17186266 - 17186347
Alignment:
Q  126 ttgagtgattcatcactttaa-cataccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt 206  Q
    ||||||||||||||  ||| | |||||||||| |||||||||||| | ||  |||||  ||||||||||||||||| |||||    
T  17186266 ttgagtgattcatcgtttttagcataccttgtgcgggatgaatcactcttcttttgagcaatatattccattttgatttgtt 17186347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 21313795 - 21313872
Alignment:
Q  131 tgattcatcactttaacataccttgtacgggatgaatcattat--tgatttgaataatatattccattttgacttgtt 206  Q
    |||||||||| |||| || |||||||||||| ||||||||| |  |  ||||| |||||||||||||||||| |||||    
T  21313795 tgattcatcattttagcacaccttgtacggggtgaatcattctgtttttttgagtaatatattccattttgatttgtt 21313872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 38099573 - 38099646
Alignment:
Q  133 attcatcact-ttaacataccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt 206  Q
    |||||||||| ||| || ||||||| |||| ||||||||| ||| ||||| |||||||||||||||||| |||||    
T  38099573 attcatcactcttatcacaccttgtgcggggtgaatcatttttg-tttgagtaatatattccattttgatttgtt 38099646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 37268329 - 37268410
Alignment:
Q  126 ttgagtgattcatcactttaa-cataccttgtacgggatgaatcattattgatttgaataatatattccattttgacttgtt 206  Q
    ||||||||||| ||||||| | || |||||||||||| ||||||| | ||  |||||  ||||||||||||||||| |||||    
T  37268329 ttgagtgattcgtcacttttagcacaccttgtacggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 37268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 10091 - 10015
Alignment:
Q  131 tgattcatcactttaacataccttgtacgggatgaatcattat-tgatttgaataatatattccattttgacttgtt 206  Q
    |||||||||| |||| || ||||||| |||| ||||||||| | |  ||||| |||||||||||||||||| |||||    
T  10091 tgattcatcattttagcacaccttgtgcggggtgaatcattctgttttttgagtaatatattccattttgatttgtt 10015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University