View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_10 (Length: 337)
Name: NF17988_low_10
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 44306344 - 44306030
Alignment:
| Q |
22 |
ttagctaactagattatttttaatgagtttattttaatttgagattgattttgggtgacagggaaataaaaaagtctagatgtctccatttatcaggagg |
121 |
Q |
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| T |
44306344 |
ttagctaactagattatttttaatgagtttattttaatttgaaattgattttgggtgacagggaaataaaaaagtctagatgtctccatttatcaggagg |
44306245 |
T |
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| Q |
122 |
aaaagatccatgtcacatttcaagcaacccatacatgatcggttttggagtaatcgaaattttcgtttctcaaattccagagtttcataatacgtggtgg |
221 |
Q |
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| T |
44306244 |
aaaagatccatgtcacatttcaagcaacccatacatgatcggttttggagtaatcgaaattttcgtttctcaaattccagagtttcataatacgtggtgg |
44306145 |
T |
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| Q |
222 |
ctctcagtaatagctgcaataatgtcttttggctattccacaattggcgtctttttagcaatttcccagacagcaggttatcgtcgttttattttataga |
321 |
Q |
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| T |
44306144 |
ctctcagtaatagctgcaataatgtcttttggctattccacaattggcgtctttttagcaatttctcaaacagcaggttatcgtcattttattttataga |
44306045 |
T |
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| Q |
322 |
-gactatagatgaaa |
335 |
Q |
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||||| |||||||| |
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| T |
44306044 |
ggactaaagatgaaa |
44306030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 44315791 - 44315655
Alignment:
| Q |
114 |
tcaggaggaaaagatccatgtcacatttcaagcaacccatacatgatcggttttggagtaatcgaaattttcgtttctcaaattccagagtttcataata |
213 |
Q |
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| T |
44315791 |
tcaggaggaaaagactcatgtcacatttcaagcaatccatacatgatagcatttggagtaatccaaattttcttttctcaaattccagattttgataaaa |
44315692 |
T |
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| Q |
214 |
cgtggtggctctcagtaatagctgcaataatgtcttt |
250 |
Q |
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| T |
44315691 |
tgtggtggctctcaatagttgcagcaatcatgtcttt |
44315655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 67 - 267
Target Start/End: Complemental strand, 44323774 - 44323574
Alignment:
| Q |
67 |
tgattttgggtgacagggaaataaaaaagtctagatgtctccatttatcaggaggaaaagatccatgtcacatttcaagcaacccatacatgatcggttt |
166 |
Q |
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||||||||| |||||||||||| ||||||||| |||| ||||| ||| | |||||||| ||||||| |||||| |||||||||||||||| | ||| |
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| T |
44323774 |
tgattttggttgacagggaaatcaaaaagtctttatgtgtccatacatctgatggaaaagacgcatgtcatatttcaggcaacccatacatgattgcttt |
44323675 |
T |
|
| Q |
167 |
tggagtaatcgaaattttcgtttctcaaattccagagtttcataatacgtggtggctctcagtaatagctgcaataatgtcttttggctattccacaatt |
266 |
Q |
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||| || || ||||| |||||||||||||||| |||||||| | ||||||||||||| || | |||||| | |||||||| ||| ||||||||| |
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| T |
44323674 |
tggcgtggcacaacttttcctttctcaaattccagattttcataacatgtggtggctctcaatagttgctgcagtcatgtctttcttctactccacaatt |
44323575 |
T |
|
| Q |
267 |
g |
267 |
Q |
| |
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| T |
44323574 |
g |
44323574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 39428140 - 39428042
Alignment:
| Q |
129 |
ccatgtcacatttcaagcaacccatacatgatcggttttggagtaatcgaaattttcgtttctcaaattccagagtttcataatacgtggtggctctca |
227 |
Q |
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||||||||||| |||||||||| |||||||||| ||||| || || |||||||| |||| ||||||||||| ||| || | | |||||||||||| |
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| T |
39428140 |
ccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatctggtggctctca |
39428042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6250080 - 6250178
Alignment:
| Q |
129 |
ccatgtcacatttcaagcaacccatacatgatcggttttggagtaatcgaaattttcgtttctcaaattccagagtttcataatacgtggtggctctca |
227 |
Q |
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||||||||||| |||||||||| |||||||||| ||||| || || |||||||| |||| ||||||||||| ||| || | | |||||||||||| |
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| T |
6250080 |
ccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctca |
6250178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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