View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_11 (Length: 327)
Name: NF17988_low_11
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 33227048 - 33227368
Alignment:
| Q |
1 |
cacatgttttgtaaaatatgactaagtggacacatgataaaaaatgcatatcgtacacacaaaattatatccttttctgggtaaaaattgaggtaggagc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33227048 |
cacatgttttgtaaaatatgactaggtggacacatgataaaaaatgcatatcgtacacacaaaattatatccttttctgggtaaaagttgaggtaggagc |
33227147 |
T |
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| Q |
101 |
taatgaatttcagttttcttttaatcactaagacgtaagttattttttcagacgcaatcttcatacaaaattctatccatttgtgg--nnnnnnnatatc |
198 |
Q |
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||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33227148 |
taaagaatttcagttttc-tttcatcactaagacgtaagttattttttcagacgcaatcttcatacaaaattctatccatttgtggtttttttttttatc |
33227246 |
T |
|
| Q |
199 |
tccaaaactagaagcaatcttcactccttttataaaaatatttatttttcataggttccacgcatcaaaactaatcttattttagacgtttgcaatattg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33227247 |
tccaaaactagaagcaatcttcactccttttataaaaatatttatttttcataggttccacgcatcaaaactaatcttattttagacgtttgcaatattg |
33227346 |
T |
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| Q |
299 |
tgagaatc-taatatattcttc |
319 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
33227347 |
tgagaatcttaatatattcttc |
33227368 |
T |
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