View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_17 (Length: 282)
Name: NF17988_low_17
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 46612821 - 46613070
Alignment:
| Q |
20 |
ccatcaaagaatgattttggagggagggatacgaaagtgctgcgaaaactaaaatactcttatttttctttccgtttccatcactgtattttaataacaa |
119 |
Q |
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| T |
46612821 |
ccatcaaagaatgattttggagggagggatacgaaagtgctgcgaaaactaaaatactcttatttttctttccgtttccatcactattttttaataacaa |
46612920 |
T |
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| Q |
120 |
atgtta---tgttaattgttatgttagtattttcatctttgttaagacttgaaccctgaaccttttaagccacgggaaatcttcttacgactaatggata |
216 |
Q |
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| T |
46612921 |
atgttaatatgttaattgttatgttagtattttcatctttgttaagacttgagccctgaaccttttaagccacgggaaatcttcttacgactaatggata |
46613020 |
T |
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| Q |
217 |
aacggacagtaaataaataaaatttaaaagttatctcatctgtcatattg |
266 |
Q |
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| T |
46613021 |
aacgggcagtaaataaataaaatttaaaagttatctcatctgtcatattg |
46613070 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 6610963 - 6611010
Alignment:
| Q |
124 |
tatgttaattgttatgttagtattttcatctttgttaagacttgaacc |
171 |
Q |
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| T |
6610963 |
tatgttaattgttatgttagtatttttctctttgtcaagacttaaacc |
6611010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 26179542 - 26179584
Alignment:
| Q |
108 |
ttttaataacaaatgttatgttaattgttatgttagtattttc |
150 |
Q |
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| T |
26179542 |
ttttaaaaataaatattatgttaattgttatgttagtattttc |
26179584 |
T |
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