View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_18 (Length: 277)
Name: NF17988_low_18
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 5752104 - 5752360
Alignment:
| Q |
1 |
tggtttgcataaatgtgcggtcttttcaacccaaattgaatttcttatacgaatgatggttaaagatgatcttgtaatatgtccaaaagattatcgttac |
100 |
Q |
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| T |
5752104 |
tggtttgcataaatgtgcggtcttttcaacccaaattgaatttcttagacgaatgatggttaaagatgatcttgtaatatgtccaaaagattatcgttac |
5752203 |
T |
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| Q |
101 |
tcttgtatacatcacaataattgatacacatacattcccgcgtgtgtgtgagcaaagatctatttacatcaagtatcagacttatcatacttacactttc |
200 |
Q |
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| T |
5752204 |
tcttgtatacatcacaataattgatacacatacatttccgcgtgtgtgtgagcaaagatctatttacatcaagtatcagacttatcatacttacactttc |
5752303 |
T |
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| Q |
201 |
aataactctttctagaagaagtaataaatcaatccaatagttgaatatcatgatatatt |
259 |
Q |
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| T |
5752304 |
aataactctttctagaagaagtaataaatcaatccaatagttga--atcatgatatatt |
5752360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 5747711 - 5747783
Alignment:
| Q |
174 |
tatcagacttatcatacttacactttcaataactctttctagaagaagtaataaatcaatccaatagttgaat |
246 |
Q |
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| T |
5747711 |
tatcatacttagcatacttacacaatcaataactcattttagaaaaaataataaatcaatctaacagttgaat |
5747783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 5747636 - 5747690
Alignment:
| Q |
76 |
aatatgtccaaaagattatcgttactcttgtatacatcacaataattgatacaca |
130 |
Q |
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| T |
5747636 |
aatatgtccaaaagattattgttactcacgtagacattgcaataattgatacaca |
5747690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18682142 - 18682398
Alignment:
| Q |
1 |
tggtttgcataaatgtgcggtcttttcaacccaaattgaatttcttatacgaatgatggttaaagatgatcttgtaatatgtccaaaagattatcgttac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18682142 |
tggtttgcataaatgtgcggtcttttcaacccaaattgaatttcttagacgaatgatggttaaagatgatcttgtaatatgtccaaaagattatcgttac |
18682241 |
T |
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| Q |
101 |
tcttgtatacatcacaataattgatacacatacattcccgcgtgtgtgtgagcaaagatctatttacatcaagtatcagacttatcatacttacactttc |
200 |
Q |
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| T |
18682242 |
tcttgtatacatcacaataattgatacacatacatttccgcgtgtgtgtgagcaaagatctatttacatcaagtatcagacttatcatacttacactttc |
18682341 |
T |
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| Q |
201 |
aataactctttctagaagaagtaataaatcaatccaatagttgaatatcatgatatatt |
259 |
Q |
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| T |
18682342 |
aataactctttctagaagaagtaataaatcaatccaatagttga--atcatgatatatt |
18682398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 18677749 - 18677821
Alignment:
| Q |
174 |
tatcagacttatcatacttacactttcaataactctttctagaagaagtaataaatcaatccaatagttgaat |
246 |
Q |
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| T |
18677749 |
tatcatacttagcatacttacacaatcaataactcattttagaaaaaataataaatcaatctaacagttgaat |
18677821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 18677674 - 18677728
Alignment:
| Q |
76 |
aatatgtccaaaagattatcgttactcttgtatacatcacaataattgatacaca |
130 |
Q |
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| T |
18677674 |
aatatgtccaaaagattattgttactcacgtagacattgcaataattgatacaca |
18677728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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