View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_23 (Length: 250)
Name: NF17988_low_23
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_23 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold1126 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 26308554 - 26308318
Alignment:
| Q |
14 |
aggtgtctatgtatcattgctttttgtgaaatgtactgccctcaaacttcaacaaagaagaggaataagttaagcacaagtactaaaagtaaaaattaaa |
113 |
Q |
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| T |
26308554 |
aggtgtctatgtatcattgctctttgtcaaatgtactgccctcaaacttcaacaaagaagaggaataagttaagcacaagtactaaaagtaaaaattaaa |
26308455 |
T |
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| Q |
114 |
tcgatataccacaaggatgttgacatgacatgactacatttttgtataccataattaaaatgcatgtagcatgacttttactacttggaaaacaaacaac |
213 |
Q |
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| T |
26308454 |
ttgatataccacaaggatgttgacatgacatgactacatttttgtataccataattaaaatgcatgtagcatgacatttactacttggaaaacaaacaac |
26308355 |
T |
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| Q |
214 |
cacacattagtgacaagaagttttgcatatccacaca |
250 |
Q |
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| T |
26308354 |
cacacattagtgacaagaagttttgcatatccacaca |
26308318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 26311588 - 26311382
Alignment:
| Q |
42 |
aaatgtactgccctcaaacttcaacaaagaagaggaataagttaagcacaagtactaaaagtaaaaattaaatcgatataccacaaggatgttgacatga |
141 |
Q |
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| T |
26311588 |
aaatgtactgccctcaaacttcaacaaagaagaggaataagttaagcacaagtactaaaagtaaaaattaaattgatataccacaaggatgttgacatga |
26311489 |
T |
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| Q |
142 |
catgactacatttttgtataccataattaaaatgcatgtagcatgacttttactacttggaaaacaaacaaccacacattagtgacaagaagttttgcat |
241 |
Q |
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| T |
26311488 |
catgactacatttttgtataccataattaaaatgcatgtagcatgacatttactgcttggaaaacaaacaaccacacattagtaacaagaagttttgcat |
26311389 |
T |
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| Q |
242 |
atccaca |
248 |
Q |
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| T |
26311388 |
atccaca |
26311382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 94 - 1
Alignment:
| Q |
42 |
aaatgtactgccctcaaacttcaacaaagaagaggaataagttaagcacaagtactaaaagtaaaaattaaatcgatataccacaaggatgttg |
135 |
Q |
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| T |
94 |
aaatgtactgccctcaaacttcaacaaagaagaggaataagttaagcacaagtactaaaagtaaaaattaaattgatataccacaaggatgttg |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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