View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_24 (Length: 246)
Name: NF17988_low_24
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 35493109 - 35492887
Alignment:
| Q |
20 |
catgtttgttagacaacactttgcataaggggctgccagttagaaataatagacacatgtactgggatgatgcaggaaccagtgaccttgacctgtatgc |
119 |
Q |
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| T |
35493109 |
catgtttgttagacaacactttgcataaggggttgccagttagaaataatagacccatgtactggaattatgcaggaaccagtgaccttgacctgtatgc |
35493010 |
T |
|
| Q |
120 |
attgtcaaccctaccattcaatctacaccaatattttcctttagcctattcaatctacaccaatattttgct-----ttagtcttttccttcggcatagt |
214 |
Q |
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| || |||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35493009 |
actgccaaccctaccattcaatcaacaccaatattttcctttaacctactcaatctacaccaatattttgcttcgacttagtcttttccttcggcatagt |
35492910 |
T |
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| Q |
215 |
tagttgttctgcacaagaataat |
237 |
Q |
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||||| ||| ||||||||||||| |
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| T |
35492909 |
tagttattcagcacaagaataat |
35492887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 35495097 - 35494872
Alignment:
| Q |
21 |
atgtttgttagacaacactttgcataaggggctgccagttagaaataatagacacatgtactgggatgatgcaggaaccagtgaccttgacctgtatgca |
120 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35495097 |
atgtttgttagacaacactttgcataagcggttgccagttagaaattagacacccatgtactgggatgatgcaggaaccagtgaccttgacctgtatgca |
35494998 |
T |
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| Q |
121 |
ttgtcaaccctaccattcaatctacaccaatattttcctttagcctattcaatctacaccaatattttgct-----ttagtcttttccttcggc----at |
211 |
Q |
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| T |
35494997 |
ctgccaaccgtaccattcaatctacaccaatattttcctttaatctattcaatctacaccaatattttgcttaagcttagtcttttccttcggcatatat |
35494898 |
T |
|
| Q |
212 |
agttagttgttctgcacaagaataat |
237 |
Q |
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|||||||| ||| ||||||||||||| |
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| T |
35494897 |
agttagttattcagcacaagaataat |
35494872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 35496156 - 35496124
Alignment:
| Q |
19 |
gcatgtttgttagacaacactttgcataagggg |
51 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35496156 |
gcatgtttgttagacaacactttgcataagggg |
35496124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 12231164 - 12231380
Alignment:
| Q |
19 |
gcatgtttgttagacaacactttgcataaggggctgccagttagaaataatagacacatgtactgggatgatgcaggaaccagtgaccttgacctgtatg |
118 |
Q |
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||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
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| T |
12231164 |
gcatgtttgttagacaacactttgcataaggagttgtcagttagaaataatagaaccatgtactgggatgatgtaggaaccagtgac------ctgtatg |
12231257 |
T |
|
| Q |
119 |
cattgtcaaccctaccattcaatctacaccaatattttcctttagcctattcaatctacaccaatattttgct-----ttagtcttttccttcggcatag |
213 |
Q |
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|| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||| |
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| T |
12231258 |
cactgccaaccctaccatttaatctacaccaatattttcctttagcctattcaatctagacaaatattttgcttcatcttagtcttttccttcgacatat |
12231357 |
T |
|
| Q |
214 |
ttagttgttctgcacaagaataa |
236 |
Q |
| |
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|||||| ||| |||||||||||| |
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| T |
12231358 |
ttagttattcagcacaagaataa |
12231380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 12229150 - 12229360
Alignment:
| Q |
19 |
gcatgtttgttagacaacactttgcataaggggctgccagttagaaataatagacacatgtactgggatgatgcaggaaccagtgaccttgacctgtatg |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||||||| ||||||||||||| | ||||| |
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| T |
12229150 |
gcatgtttgttagacaacactttgcataaggagctgtcagttagaaataatagacccatgtattgggatgatgtaggaaccagtgacat------gtatg |
12229243 |
T |
|
| Q |
119 |
cattgtcaaccctaccattcaatctacaccaatattttcctttagcctattcaatctacaccaatattttgct-----ttagtcttttccttcggcatag |
213 |
Q |
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|| || || |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
12229244 |
cactgccatccctaccatttaatctacaccaatattttcctttagcctattcattctacacaaatattttgcttcatcttagtcttttccttcggcatat |
12229343 |
T |
|
| Q |
214 |
ttagttgttctgcacaa |
230 |
Q |
| |
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|||||| ||| |||||| |
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| T |
12229344 |
ttagttattcagcacaa |
12229360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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