View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_25 (Length: 232)
Name: NF17988_low_25
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 48252755 - 48252654
Alignment:
| Q |
116 |
tatttacatcacaatttcggctttcccatacatcctttttcttaatagatagatattccatccagaataaaatataagcaaataaatatagttgaaaagt |
215 |
Q |
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| T |
48252755 |
tatttacatcacaatt-cggctttcccatacatcctttttcttaatagatagatattccatccggaatgaaatataagcaaataaatatagttgaaaagt |
48252657 |
T |
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| Q |
216 |
ttg |
218 |
Q |
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||| |
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| T |
48252656 |
ttg |
48252654 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 48252850 - 48252788
Alignment:
| Q |
20 |
catgagattaatcacttaatttaaccaaagattatttattagttaaatatttattctctttgt |
82 |
Q |
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| T |
48252850 |
catgagattaatcacttaatttaaccaaagattatttattagttaaatatttattctctttgt |
48252788 |
T |
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