View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_26 (Length: 228)
Name: NF17988_low_26
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 4315312 - 4315118
Alignment:
| Q |
23 |
agatgctgtttattttgctgatgatcttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttctct |
122 |
Q |
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| T |
4315312 |
agatgctgtttattttgctgatgatcttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttctct |
4315213 |
T |
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| Q |
123 |
cgctttttcaactttgaagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattcttgg |
217 |
Q |
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| T |
4315212 |
agctttttcaactttgaagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattcttgg |
4315118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 4306450 - 4306256
Alignment:
| Q |
23 |
agatgctgtttattttgctgatgatcttctcgaccacatttctaccaaagctgctactcagaag---aacaagcaggtgagcaccgctgttaactacttc |
119 |
Q |
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| T |
4306450 |
agatgctgtttattttactgatgatcttctcgaccacatctctaccaaagctgcaattgggaaggaaaacaaagaggtgagt---gttgttaactacttc |
4306354 |
T |
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| Q |
120 |
tctcgctttttcaactttgaagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattcttgg |
217 |
Q |
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| T |
4306353 |
tctcgctttttcaactttgaagaaagagatatggtttgtgagttggtagatatagttgctagacttgaatacattctcaaattcaaagatatttttgg |
4306256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 4253204 - 4253379
Alignment:
| Q |
39 |
gctgatgatcttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttctctcgctttttcaactttg |
138 |
Q |
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| T |
4253204 |
gctgatgaccttcttgacaacatttcaaccaaagctgctacacagaaaaacaagcaggtgagtactgct---aattatttatctcgctttttcaactttg |
4253300 |
T |
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| Q |
139 |
aagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattcttgg |
217 |
Q |
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| T |
4253301 |
aagaaagggacatgctttgtaagctggaaaatatagttgctaaacttgaatccattctcaaattcaaagatattcttgg |
4253379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 4309324 - 4309137
Alignment:
| Q |
27 |
gctgtttattttgctgatgatcttctcgaccacatttctaccaaagctgctactcagaagaacaagcaggtgagcaccgctgttaactacttctctcgct |
126 |
Q |
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||||| ||| |||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||| ||||||| || || ||||||||||||| | |
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| T |
4309324 |
gctgtctatgttgctgatgaccttttcgaccacatttgtaccaaagctgctactcggaagaacaaggaggtgagtactact---aactacttctctccat |
4309228 |
T |
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| Q |
127 |
ttttcaactttgaagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattcttgg |
217 |
Q |
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||||||| ||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||||| || |||| |||||||||| |
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| T |
4309227 |
ttttcaattttgaagaaagggatatggtttataagttggaagacatagttgctagacttgaatacattctgaaaatcaataatattcttgg |
4309137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 4246154 - 4246263
Alignment:
| Q |
110 |
taactacttctctcgctttttcaactttgaagaacgggatatggtttgtaagttggaag----atatagttgctaaacttgaatacattctcaagttcaa |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
4246154 |
taactacttctctcgctttttcaactttgaagatagggatatggtttttaagttggaagatatatatagttgctaggcttgaatacattctcaaattcaa |
4246253 |
T |
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| Q |
206 |
agatattctt |
215 |
Q |
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|||||||||| |
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| T |
4246254 |
agatattctt |
4246263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 41932703 - 41932811
Alignment:
| Q |
109 |
ttaactacttctctcgctttttcaactttgaagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaaga |
208 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||| | |||| |||||||| ||||||||| |||||||| |
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| T |
41932703 |
ttaactacttctctcgctttttcaactttgaagaaagagatatgttttgtaagttggaaaatatcgccgctagacttgaatccattctcaaattcaaaga |
41932802 |
T |
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| Q |
209 |
tattcttgg |
217 |
Q |
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||||||||| |
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| T |
41932803 |
tattcttgg |
41932811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 34803247 - 34803144
Alignment:
| Q |
114 |
tacttctctcgctttttcaactttgaagaacgggatatggtttgtaagttggaagatatagttgctaaacttgaatacattctcaagttcaaagatattc |
213 |
Q |
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||||||| |||| ||||||||||||||||| |||||||||||| |||||| ||| | |||| | ||| ||||||||||||||| || ||||||||||||| |
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| T |
34803247 |
tacttctatcgccttttcaactttgaagaaagggatatggtttttaagttagaaaacatagcttctagacttgaatacattctaaaattcaaagatattc |
34803148 |
T |
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| Q |
214 |
ttgg |
217 |
Q |
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|||| |
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| T |
34803147 |
ttgg |
34803144 |
T |
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