View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_27 (Length: 227)
Name: NF17988_low_27
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 33227344 - 33227523
Alignment:
| Q |
1 |
ttgtgagaatct-aatatattcttctacactcttggtaaaaatatatactaannnnnnnnaatagagaataaattttaaagatggtactctcacgatctt |
99 |
Q |
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| T |
33227344 |
ttgtgagaatcttaatatattcttctacactcttggtaaaaatatatactatttttttttaatagagaataaattttaaagatggtactctcacgatcta |
33227443 |
T |
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| Q |
100 |
gtattaagtgacatagttgattgttttatata----tatcaatacacaattttgatatttaacatctttaattatctatt |
175 |
Q |
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| T |
33227444 |
gtattaaatgacatagttgattgttttatatatatgtatcaatacacaattttgatatttaacatctttaattatctatt |
33227523 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 29255478 - 29255408
Alignment:
| Q |
105 |
aagtgacatagttgattgttttatatatatcaatacacaattttgatatttaacatctttaattatctatt |
175 |
Q |
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| T |
29255478 |
aagtgacatacttgactctgtcatacatatcaatacataatttttatttttaatatctttaattatctatt |
29255408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 2732826 - 2732758
Alignment:
| Q |
102 |
attaagtgacatagttgattgttttatatatatcaatacacaattttgatatttaacatctttaattat |
170 |
Q |
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| T |
2732826 |
attaagtgactttgttgattgttctatatatgtcaatacatatttttaatctataatatctttaattat |
2732758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 19897834 - 19897798
Alignment:
| Q |
134 |
tcaatacacaattttgatatttaacatctttaattat |
170 |
Q |
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||||||||||||||||| |||||| |||||||||||| |
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| T |
19897834 |
tcaatacacaattttgacatttaatatctttaattat |
19897798 |
T |
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