View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_4 (Length: 454)
Name: NF17988_low_4
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 41779930 - 41780358
Alignment:
| Q |
18 |
acttcatagttcatacacaatcttttctaatgttttagtaacattatgttatcatctcttttcattacagcacattttccgtgtgtaactgatgacgatt |
117 |
Q |
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| T |
41779930 |
acttcatagtgcatacacaatcttttctaatgttttagtaacattatgttatcatctcttttcattacagcgcattttccgtgtgtaactgatgacgatt |
41780029 |
T |
|
| Q |
118 |
gtccaaaacctgtgaacaagttaagagttatcaagtgcattgatcacatatgtcagtatgctcgtaatctccctgattttgcgtctgagatctcagagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41780030 |
gtccaaaacctgtgaacaagttaagagttatcaagtgcattgatcacatatgtcagtatgctcgtaatctccctgattttgcgtctgagatctcagagag |
41780129 |
T |
|
| Q |
218 |
tacaaaaatgccctgcaaaggagaatgatttattgtccaagaagctaaaataataaatgtaaaatataccttatgatagaatattccaaaagatgtcatt |
317 |
Q |
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| T |
41780130 |
tacaaaaatgccctgcaaaggagaatgatttattgtccaagaagctaaaataataaatgtaaaatataccttatgatagaatattccaaaagatgtcatt |
41780229 |
T |
|
| Q |
318 |
taaatattgtatgggtaccaaaaaaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgtattttaaagtgatgtgacagcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41780230 |
taaatattgtatgggtaccaaaaaaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgtattttaaagtgatgtgacagcc |
41780329 |
T |
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| Q |
418 |
agagagtattattatatttccttcttctc |
446 |
Q |
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| T |
41780330 |
aaagagtattattatatttccttcttctc |
41780358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 45 - 409
Target Start/End: Original strand, 41791375 - 41791736
Alignment:
| Q |
45 |
taatgttttagtaacattatgttatcatctcttttcattacagcacattttccgtgtgtaactgatgacgattgtccaaaacctgtgaacaagttaagag |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||| || ||||||||||| | |
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| T |
41791375 |
taatgttttagtaacattatgttatcatctcttttcattacagaacatattcaatgtgtaattgatgacgattgtccaaaatctttgaacaagttattaa |
41791474 |
T |
|
| Q |
145 |
ttatcaagtgcattgatcacatatgtcagtatgctcgtaatctccctgattttgcgtctgagatctcagagagtacaaaaatgccctgcaaaggagaatg |
244 |
Q |
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| T |
41791475 |
ttatcaagtgcattaatcatgtatgtcagtatgttggtaatctccctgattttgcatcccagatcccaaagagtacgaaaatgccctacaaaggagaatg |
41791574 |
T |
|
| Q |
245 |
atttattgtccaagaagctaaaat-aataaatgt-aaaatataccttatgatag--aatattccaaaagatgtcatttaaatattgtatgggtaccaaaa |
340 |
Q |
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| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||| |
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| T |
41791575 |
agttattgtccaagaagctaaaataaataaatgtgaaaatataccttatgataggagatattccaaaagatgtcatttaaatattgtatttgaacccaaa |
41791674 |
T |
|
| Q |
341 |
aaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgtattttaaagtgatg |
409 |
Q |
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|| | ||||||||| || || |||||||||||||||||||||||||| |||||||||||| |
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| T |
41791675 |
aa-------aaaaattcttttccaaagttcaggaacctttcatttatgattatgtaatttaaagtgatg |
41791736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 269 - 446
Target Start/End: Original strand, 41786742 - 41786927
Alignment:
| Q |
269 |
aataaatgtaaaatataccttatgatagaatattccaaaagatgtcatttaaatattgtatgggtaccaaaaaaggttattattttttcttttcctaact |
368 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
41786742 |
aataaatgtgaaatataccttatgatagaatatttcaaaagatgtcatctaaatattgtatggatacccaaaaaagttattattttttcttttcctaact |
41786841 |
T |
|
| Q |
369 |
tgaggaacctttcatttatgat----tatgtattttaaagtgatg---tgacagccagagagtatta-ttatatttccttcttctc |
446 |
Q |
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| |||||||||||||||||||| |||||| |||||||||||| |||| || ||||||||| |||||||||||||||||| |
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| T |
41786842 |
tcaggaacctttcatttatgattatatatgtactttaaagtgatgataagacaaccgaagagtattatttatatttccttcttctc |
41786927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 58 - 263
Target Start/End: Original strand, 41785531 - 41785739
Alignment:
| Q |
58 |
acattatgttatcatctcttttcattacagcacattttccgtgtgtaactgatgacgattgtccaaaacctgtgaacaagttaagagttatcaagtgcat |
157 |
Q |
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||||||||||| |||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||| |
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| T |
41785531 |
acattatgttaccatctcttttcattacagaggtttttcagcgtgtaactgatgacggttgtccaaaacctgtgaaccatttaagagttgtcaagtgcat |
41785630 |
T |
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| Q |
158 |
tgatcacatatgtcagtatgctcgta---atctccctgattttgcgtctgagatctcagagagtacaaaaatgccctgcaaaggagaatgatttattgtc |
254 |
Q |
| |
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||| ||||||||| |||||| | || ||| |||||||||||| || |||| |||||||||||||||||||| | ||| |||||||| ||||| || |
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| T |
41785631 |
tgaacacatatgtgagtatggttataattatcgccctgattttgcatcccagattccagagagtacaaaaatgccccgtaaaagagaatgagttattatc |
41785730 |
T |
|
| Q |
255 |
caagaagct |
263 |
Q |
| |
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||||||||| |
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| T |
41785731 |
caagaagct |
41785739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 30790498 - 30790564
Alignment:
| Q |
26 |
gttcatacacaatcttttctaatgttttagtaacattatgttatcatctcttttcattacagcacat |
92 |
Q |
| |
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|||||||||||||||||| | |||||| ||||||||||| |||| |||| ||||||||||||||||| |
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| T |
30790498 |
gttcatacacaatcttttatcatgtttcagtaacattattttattatcttttttcattacagcacat |
30790564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 396
Target Start/End: Complemental strand, 1681276 - 1681104
Alignment:
| Q |
215 |
gagtacaaaaatgccctgcaaaggagaatgatttattgtccaagaagctaaaataataaatgtaaaatataccttatgatagaatattccaaaagatgtc |
314 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||| |||| || ||||||||| |||||| ||| |||||||| | |||||||| ||||| |
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| T |
1681276 |
gagtacaaaaatgcatggcaaagaagaatgatttattgt-------gctagaaaaataaatgtgaaatatgcct-atgatagatttttccaaaatatgtc |
1681185 |
T |
|
| Q |
315 |
atttaaatattgtatgggtaccaaaaaaggttattattttttcttttcctaacttgaggaacctttcatttatgattatgta |
396 |
Q |
| |
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|||||||||||||||||| ||| ||| | | ||| |||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
1681184 |
atttaaatattgtatgggcacccaaataattaatt-ttttttcttttcctaatttccggaacctttcatttatgattatgta |
1681104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 1681513 - 1681446
Alignment:
| Q |
25 |
agttcatacacaatcttttctaatgttttagtaacattatgttatcatctcttttcattacagcacat |
92 |
Q |
| |
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||||| ||||||||||||| | ||||||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
1681513 |
agttcgtacacaatcttttatcatgttttgataacattattttattatctcttttcattacagcacat |
1681446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 1681438 - 1681334
Alignment:
| Q |
66 |
ttatcatctcttttcattacagcacattttccgtgtgtaactgatgacgattgtccaaaacctgtgaacaagttaagagttatcaagtgcattgatcaca |
165 |
Q |
| |
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|||| |||||||||||||||||||||| || |||| ||||||||| |||||||||||| | ||||||| ||| || ||| || |||||||||||| |
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| T |
1681438 |
ttattatctcttttcattacagcacatattaaatgtgaaactgatgatgattgtccaaaatccttgaacaacttattagctattaaatgcattgatcacg |
1681339 |
T |
|
| Q |
166 |
tatgt |
170 |
Q |
| |
|
||||| |
|
|
| T |
1681338 |
tatgt |
1681334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 15584239 - 15584289
Alignment:
| Q |
269 |
aataaatgtaaaatataccttatgatagaatattccaaaagatgtcattta |
319 |
Q |
| |
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|||||||||| |||||| |||||||||||||||| || |||||||||||| |
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| T |
15584239 |
aataaatgtacaatatatcttatgatagaatatttcatgagatgtcattta |
15584289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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