View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17988_low_6 (Length: 426)
Name: NF17988_low_6
Description: NF17988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17988_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 170 - 409
Target Start/End: Complemental strand, 40850527 - 40850288
Alignment:
| Q |
170 |
gtcaacggcacttgaatatgatcataagagattttctgcatttaaagaacttgagtttaaatttagctctaaaaatgtaacagtgtcaagtcttttgaaa |
269 |
Q |
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| T |
40850527 |
gtcaacggcacttgaataagatcataagagattttttgcatttaaagaacttgagtttaaatttagctctaaaaatgtaacagtgtcaagtcttttgaaa |
40850428 |
T |
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| Q |
270 |
cataacattttacacgaaatataactctacatttgaggatactcaatttatacggaataaatgtttcagcaaataaaatggtaatacatgaatgggttgt |
369 |
Q |
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| T |
40850427 |
cataacattttacacgaaatataactctacatttgaggatactcaatttatacgaaataaatgtttcagcaaataaaatggtaatacatgaatgggttgt |
40850328 |
T |
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| Q |
370 |
ttatcactaaatctgtaaaagaaaaaatttgtattataaa |
409 |
Q |
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| T |
40850327 |
ttatcactaaatctgtaaaagaaaaaatttgtattataaa |
40850288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 40851104 - 40850929
Alignment:
| Q |
8 |
agataatactcaattacacaaaattaatattttactaaataaagtggtagatg-tatgtgaaagagttgtttatcactagacttagggcacataaataga |
106 |
Q |
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| T |
40851104 |
agatgatactcaattacaaaaaataaatattttactaaataaagtggtagataatatgtgaaagagttgtttatcactagacttagggcacataaataga |
40851005 |
T |
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| Q |
107 |
aacaatctctttctatcacaggcctcgtaattgcttggtgtggcaatcagctatttggaaaaggtcaacggcactt |
182 |
Q |
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| T |
40851004 |
aacaatctctttctatcacaggcctcgtaattgcttggtgtggcaatcaactatttggaaaaggtcaacggcactt |
40850929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 40852512 - 40852452
Alignment:
| Q |
214 |
aagaacttgagtttaaatttagctctaaaaatgtaacagtgtcaagtcttttgaaacataa |
274 |
Q |
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| T |
40852512 |
aagaatttgagtttaaattcagttttaaaaatgtaatattgttaaatcttttgaaacataa |
40852452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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